Selected publications

 

Lui, L., Ulbrich, J., Müller, J., Wüstenfeld, T., Aeberhard, L., Kress, TR., Muthalago, N., Rycak, L., Rudalska, R., Moll, R., Kempa, S*., Zender, L., Eilers, M., Murphy, D. (2012) Deregulated MYC expression induces dependence upon AMPK-related kinase 5. Nature (published in 29 March 2012)

*corresponding for metabolome and proteome analyses

Jungkamp, A., Stoeckius, M., Mecenas, D., Grün, D., Mastrobuoni, G., Kempa, S., Rajewsky, N. (2011) In Vivo and Transcriptome-wide Identification of RNA Binding Protein Target Sites. Molecular Cell, Volume 44, Issue 5, 828-840

Adamidi, C., Wang, Y.B., Gruen, D., Mastrobuoni, G., You, X.T., Tolle, D., Dodt, M., Mackowiak, S.D., Gogol-Doering, A., Oenal, P., Rybak, A., Ross, E., Alvarado, A.S., Kempa, S.*, Dieterich, C.*, Rajewsky, N.*, and Chen, W.* (2011). De novo assembly and validation of planaria transcriptome by massive parallel sequencing and shotgun proteomics. Genome Research 21, 1193-1200.

*Shared correspondence

Beato, V.M., Navarro-Gochicoa, M.T., Rexach, J., Herrera-Rodriguez, M.B., Camacho-Cristobal, J.J., Kempa, S., Weckwerth, W., and Gonzalez-Fontes, A. (2011). Expression of root glutamate dehydrogenase genes in tobacco plants subjected to boron deprivation. Plant Physiology and Biochemistry 49, 1350-1354.

Dani, F.R., Michelucci, E., Francese, S., Mastrobuoni, G., Cappellozza, S., La Marca, G., Niccolini, A., Felicioli, A., Moneti, G., and Pelosi, P. (2011). Odorant-binding proteins and chemosensory proteins in pheromone detection and release in the silkmoth Bombyx mori. Chemical Senses 36, 335-344.

Gabbiani, C., Mastrobuoni, G., Sorrentino, F., Dani, B., Rigobello, M.P., Bindoli, A., Cinellu, M.A., Pieraccini, G., Messori, L., and Casini, A. (2011). Thioredoxin reductase, an emerging target for anticancer metallodrugs. Enzyme inhibition by cytotoxic gold(III) compounds studied with combined mass spectrometry and biochemical assays. MedChemComm2, 50-54.

Wienkoop, S.*, Weiss, J.*, May, P.*, Kempa, S.*, Irgang, S., Recuenco-Munoz, L., Pietzke, M., Schwemmer, T., Rupprecht, J., Egelhofer, V., and Weckwerth, W. (2010). Targeted proteomics for Chlamydomonas reinhardtii combined with rapid subcellular protein fractionation, metabolomics and metabolic flux analyses. Molecular Biosystems 6, 1018-1031.

*Co-first author

Christian, N., May, P., Kempa, S., Handorf, T., and Ebenhoh, O. (2009). An integrative approach towards completing genome-scale metabolic networks. Molecular Biosystems 5, 1889-1903.

Kempa, S., Hummel, J., Schwemmer, T., Pietzke, M., Strehmel, N., Wienkoop, S., Kopka, J., and Weckwerth, W. (2009). An automated GCxGC-TOF-MS protocol for batch-wise extraction and alignment of mass isotopomer matrixes from differential (13)C-labelling experiments: a case study for photoautotrophic-mixotrophic grown Chlamydomonas reinhardtii cells. Journal of Basic Microbiology 49, 82-91.

Larrainzar, E., Wienkoop, S., Scherling, C., Kempa, S., Ladrera, R., Arrese-Igor, C., Weckwerth, W., and Gonzalez, E.M. (2009). Carbon Metabolism and Bacteroid Functioning Are Involved in the Regulation of Nitrogen Fixation in Medicago truncatula Under Drought and Recovery. Molecular Plant-Microbe Interactions22, 1565-1576.

May, P., Christian, J.O., Kempa, S., and Walther, D. (2009). ChlamyCyc: an integrative systems biology database and web-portal for Chlamydomonas reinhardtii. BMC Genomics 10, 209.

Kempa, S., Krasensky, J., Dal Santo, S., Kopka, J., and Jonak, C. (2008). A Central Role of Abscisic Acid in Stress-Regulated Carbohydrate Metabolism. PLoS ONE 3, e3935.

May, P.*, Wienkoop, S.*, Kempa, S.*, Usadel, B.*, Christian, N.*, Rupprecht, J., Weiss, J., Recuenco-Munoz, L., Ebenhoh, O., Weckwerth, W., and Walther, D. (2008). Metabolomics- and proteomics-assisted genome annotation and analysis of the draft metabolic network of Chlamydomonas reinhardtii. Genetics 179, 157-166.

*Co-first author

Kempa, S., Rozhon, W., Samaj, J., Erban, A., Baluska, F., Becker, T., Haselmayer, J., Schleiff, E., Kopka, J., Hirt, H., and Jonak, C. (2007). A plastid-localized glycogen synthase kinase 3 modulates stress tolerance and carbohydrate metabolism. Plant Journal 49, 1076-1090.

Nikiforova, V.J., Bielecka, M., Gakiere, B., Krueger, S., Rinder, J., Kempa, S., Morcuende, R., Scheible, W.R., Hesse, H., and Hoefgen, R. (2006). Effect of sulfur availability on the integrity of amino acid biosynthesis in plants. Amino Acids 30, 173-183.