Dokumentation der Sequenzanalyseprogramme

Sequence alignment search: Blast (v 2.2.2)
Sequence assembly: Cap3
Viewing and editing sequence assemblies from phrap: Consed (v 11.0)
Comparing two sets of sequences: Crossmatch (v 0.990319)
Evaluates data set quality by reading phd files in a directory: Daev (v 0.020426.c)
Sequence analysis software package: Emboss (v 2.6.0)
- Introduction to Emboss as Powerpoint presentation
- Documentation of the Emboss package programs
Sequence analysis package using profile hidden Markov models: Hmmer (v 2.2)
Combines different protein signature recognition methods into one resource: InterProScan (v 3.1)
- InterProScan FAQ's
Reads phd files and writes FASTA files: Phd2fasta (v 0.990622)
Sequence phragment assembly: Phrap (v 0.990319)
Evaluates sequencer trace data: Phred (v 0.020425.c)
Adsorption, distribution, metabolism, and excretion (ADME) prediction: QikProp (v 2.0)
Sequence analysis software package: Staden (v 2001.0)
Comparing two sets of sequences: Swat