Documentations of sequence analysis programs
- Sequence alignment search: Blast (v 2.2.2)
- Sequence assembly: Cap3
- Viewing and editing sequence assemblies from phrap: Consed (v 11.0)
- Comparing two sets of sequences: Crossmatch (v 0.990319)
- Evaluates data set quality by reading phd files in a directory: Daev (v 0.020426.c)
- Sequence analysis software package: Emboss (v 2.6.0)
- Sequence analysis package using profile hidden Markov models: Hmmer (v 2.2)
- Combines different protein signature recognition methods into one resource: InterProScan (v 3.1)
- Reads phd files and writes FASTA files: Phd2fasta (v 0.990622)
- Sequence phragment assembly: Phrap (v 0.990319)
- Evaluates sequencer trace data: Phred (v 0.020425.c)
- Adsorption, distribution, metabolism, and excretion (ADME) prediction: QikProp (v 2.0)
- Sequence analysis software package: Staden (v 2001.0)
- Comparing two sets of sequences: Swat