Lacraz G.P.A.; Junker J.P.; Gladka M.M.; Molenaar B.; Scholman K.T.; Vigil-Garcia M.; Versteeg D.; de Ruiter H.; Vermunt M.W.; Creyghton M.P.; Huibers M.M.H.; de Jonge N.; van Oudenaarden A.; van Rooij E.
Tomo-seq identifies SOX9 as a key regulator of cardiac fibrosis during ischemic injury
Circulation 136 (15): 1396-1409 (2017-10-10)

van den Brink S.C.; Sage F.; Vertesy A.; Spanjaard B.; Peterson-Maduro J.; Baron C.S.; Robin C.; van Oudenaarden A.
Single-cell sequencing reveals dissociation-induced gene expression in tissue subpopulations
Nature Methods 14 (10): 935-936 (2017-09-29)


Junker J.P.; van Oudenaarden A.
Single-cell transcriptomics enters the age of mass production
Molecular Cell 58 (4): 563-564 (2015-05-21)

Schuijers J.; Junker J.P.; Mokry M.; Hatzis P.; Koo B.K.; Sasselli V.; van der Flier L.G.; Cuppen E.; van Oudenaarden A.; Clevers H.
Ascl2 acts as an R-spondin/Wnt-responsive switch to control stemness in intestinal crypts
Cell Stem Cell 16 (2): 158-170 (2015-02-05)


Junker J.P.; Noel E.S.; Guryev V.; Peterson K.A.; Shah G.; Huisken J.; McMahon A.P.; Berezikov E.; Bakkers J.; van Oudenaarden A.
Genome-wide RNA tomography in the zebrafish embryo
Cell 159 (3): 662-675 (2014-10-23)

Junker J.P.; van Oudenaarden A.
Every cell is special: genome-wide studies add a new dimension to single-cell biology
Cell 157 (1): 8-11 (2014-03-27)


Peterson K.A.; Nishi Y.; Ma W.; Vedenko A.; Shokri L.; Zhang X.; McFarlane M.; Baizabal J.M.; Junker J.P.; van Oudenaarden A.; Mikkelsen T.; Bernstein B.E.; Bailey T.L.; Bulyk M.L.; Wong W.H.; McMahon A.P.
Neural-specific Sox2 input and differential Gli-binding affinity provide context and positional information in Shh-directed neural patterning
Genes & Development 26 (24): 2802-2816 (2012-12-15)

Junker J.P.; van Oudenaarden A.
When noisy neighbors are a blessing: analysis of gene expression noise identifies coregulated genes
Molecular Cell 45 (4): 437-438 (2012-02-24)


Junker J.P.; Rief M.
Evidence for a broad transition-state ensemble in calmodulin folding from single-molecule force spectroscopy
Angewandte Chemie International Edition in English 49 (19): 3306-3309 (2010-04-26)


Junker J.P.; Ziegler F.; Rief M.
Ligand-dependent equilibrium fluctuations of single calmodulin molecules
Science 323 (5914): 633-637 (2009-01-30)