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25. Oktober 2019 in Nat Commun

Single-cell RNA-sequencing of herpes simplex virus 1-infected cells connects NRF2 activation to an antiviral program

E. Wyler
V. Franke
J. Menegatti
C. Kocks
A. Boltengagen
S. Praktiknjo
B. Walch-Rückheim
J. Bosse
N. Rajewsky
F. Grässer
A. Akalin
M. Landthaler

18. März 2019 in Nucleic Acids Res

Alternative 3' UTRs direct localization of functionally diverse protein isoforms in neuronal compartments

C. Ciolli Mattioli
A. Rom
V. Franke
K. Imami
G. Arrey
M. Terne
A. Woehler
A. Akalin
I. Ulitsky
M. Chekulaeva

14. Dezember 2018 in EMBO J

The IκB kinase complex is a regulator of mRNA stability

N. Mikuda
M. Kolesnichenko
P. Beaudette
O. Popp
B. Uyar
W. Sun
A.B. Tufan
B. Perder
A. Akalin
W. Chen
P. Mertins
G. Dittmar
M. Hinz
C. Scheidereit

10. September 2018 in Dev Cell

FACT sets a barrier for cell fate reprogramming in Caenorhabditis elegans and human cells

E. Kolundzic
A. Ofenbauer
S.I. Bulut
B. Uyar
G. Baytek
A. Sommermeier
S. Seelk
M. He
A. Hirsekorn
D. Vucicevic
A. Akalin
S. Diecke
S.A. Lacadie
B. Tursun

13. Februar 2018 in Cell Rep

Nuclear organization in the spinal cord depends on motor neuron lamination orchestrated by catenin and afadin function

C. Dewitz
S. Pimpinella
P. Hackel
A. Akalin
T.M. Jessell
N. Zampieri

31. Oktober 2017 in Genome Biol

Widespread activation of antisense transcription of the host genome during herpes simplex virus 1 infection

E. Wyler
J. Menegatti
V. Franke
C. Kocks
A. Boltengagen
T. Hennig
K. Theil
A. Rutkowski
C. Ferrai
L. Baer
L. Kermas
C. Friedel
N. Rajewsky
A. Akalin
L. Dölken
F. Grässer
M. Landthaler

19. September 2017 in Nat Commun

RNA localization is a key determinant of neurite-enriched proteome

A. Zappulo
D. van den Bruck
C. Ciolli Mattioli
V. Franke
K. Imami
E. McShane
M. Moreno-Estelles
L. Calviello
A. Filipchyk
E. Peguero-Sanchez
T. Müller
A. Woehler
C. Birchmeier
E. Merino
N. Rajewsky
U. Ohler
E.O. Mazzoni
M. Selbach
A. Akalin
M. Chekulaeva

02. Juni 2017 in Nucleic Acids Res

RCAS: an RNA centric annotation system for transcriptome-wide regions of interest

B. Uyar
D. Yusuf
R. Wurmus
N. Rajewsky
U. Ohler
A. Akalin

28. Januar 2015 in Nucleic Acids Res

DoRiNA 2.0-upgrading the doRiNA database of RNA interactions in post-transcriptional regulation

K. Blin
C. Dieterich
R. Wurmus
N. Rajewsky
M. Landthaler
A. Akalin