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November 2020 / Nature LifeTime and improving European healthcare through cell-based interceptive medicine N. Rajewsky G. Almouzni S.A. Gorski S. Aerts I. Amit M.G. Bertero C. Bock A.L. Bredenoord G. Cavalli S. Chiocca H. Clevers B. De Strooper A. Eggert J. Ellenberg X.M. Fernández M. Figlerowicz S.M. Gasser N. Hubner J. Kjems J.A. Knoblich G. Krabbe P. Lichter S. Linnarsson J.C. Marine J. Marioni M.A. Marti-Renom M.G. Netea D. Nickel M. Nollmann H.R. Novak H. Parkinson S. Piccolo I. Pinheiro A. Pombo C. Popp W. Reik S. Roman-Roman P. Rosenstiel J.L. Schultze O. Stegle A. Tanay G. Testa D. Thanos F.J. Theis M.E. Torres-Padilla A. Valencia C. Vallot A. van Oudenaarden M. Vidal T. Voet 01. November 2020 / Mol Syst Biol The transcriptome dynamics of single cells during the cell cycle D. Schwabe S. Formichetti J.P. Junker M. Falcke N. Rajewsky 13. Januar 2022 / Cell Genom Single-cell-resolved dynamics of chromatin architecture delineate cell and regulatory states in zebrafish embryos A.C. McGarvey W. Kopp D. Vučićević K. Mattonet R. Kempfer A. Hirsekorn I. Bilić M. Gil A. Trinks A.M. Merks D. Panáková A. Pombo A. Akalin J.P. Junker D.Y.R. Stainier D. Garfield U. Ohler S.A. Lacadie 25. November 2021 / Nature Cell-type specialization is encoded by specific chromatin topologies W. Winick-Ng A. Kukalev I. Harabula L. Zea-Redondo D. Szabó M. Meijer L. Serebreni Y. Zhang S. Bianco A.M. Chiariello I. Irastorza-Azcarate C.J. Thieme T.M. Sparks S. Carvalho L. Fiorillo F. Musella E. Irani E.T. Triglia A.A. Kolodziejczyk A. Abentung G. Apostolova E.J. Paul V. Franke R. Kempfer A. Akalin S.A. Teichmann G. Dechant M.A. Ungless M. Nicodemi L. Welch G. Castelo-Branco A. Pombo 12. Oktober 2023 / Mol Syst Biol SLAM-Drop-seq reveals mRNA kinetic rates throughout the cell cycle H. Liu R. Arsiè D. Schwabe M. Schilling I. Minia J. Alles A. Boltengagen C. Kocks M. Falcke N. Friedman M. Landthaler N. Rajewsky 01. April 2008 / Nat Biotechnol Discovering microRNAs from deep sequencing data using miRDeep M.R. Friedlaender W. Chen C. Adamidi J. Maaskola R. Einspanier S. Knespel N. Rajewsky 10. September 2018 / Dev Cell FACT sets a barrier for cell fate reprogramming in Caenorhabditis elegans and human cells E. Kolundzic A. Ofenbauer S.I. Bulut B. Uyar G. Baytek A. Sommermeier S. Seelk M. He A. Hirsekorn D. Vucicevic A. Akalin S. Diecke S.A. Lacadie B. Tursun 20. Juni 2019 / Nucleic Acids Res HOT or not: examining the basis of high-occupancy target regions K. Wreczycka V. Franke B. Uyar R. Wurmus S. Bulut B. Tursun A. Akalin 01. Dezember 2019 / Aging Cell The conserved histone chaperone LIN-53 is required for normal lifespan and maintenance of muscle integrity in Caenorhabditis elegans. S. Müthel B. Uyar M. He A. Krause B. Vitrinel S. Bulut D. Vasiljevic I. Marchal S. Kempa A. Akalin B. Tursun 16. Oktober 2017 / Mol Syst Biol RNA polymerase II primes Polycomb-repressed developmental genes throughout terminal neuronal differentiation C. Ferrai E. Torlai Triglia J.R. Risner-Janiczek T. Rito O.J.L. Rackham I. De Santiago A. Kukalev M. Nicodemi A. Akalin M. Li M.A. Ungless A. Pombo
19. November 2020 / Nature LifeTime and improving European healthcare through cell-based interceptive medicine N. Rajewsky G. Almouzni S.A. Gorski S. Aerts I. Amit M.G. Bertero C. Bock A.L. Bredenoord G. Cavalli S. Chiocca H. Clevers B. De Strooper A. Eggert J. Ellenberg X.M. Fernández M. Figlerowicz S.M. Gasser N. Hubner J. Kjems J.A. Knoblich G. Krabbe P. Lichter S. Linnarsson J.C. Marine J. Marioni M.A. Marti-Renom M.G. Netea D. Nickel M. Nollmann H.R. Novak H. Parkinson S. Piccolo I. Pinheiro A. Pombo C. Popp W. Reik S. Roman-Roman P. Rosenstiel J.L. Schultze O. Stegle A. Tanay G. Testa D. Thanos F.J. Theis M.E. Torres-Padilla A. Valencia C. Vallot A. van Oudenaarden M. Vidal T. Voet
01. November 2020 / Mol Syst Biol The transcriptome dynamics of single cells during the cell cycle D. Schwabe S. Formichetti J.P. Junker M. Falcke N. Rajewsky
13. Januar 2022 / Cell Genom Single-cell-resolved dynamics of chromatin architecture delineate cell and regulatory states in zebrafish embryos A.C. McGarvey W. Kopp D. Vučićević K. Mattonet R. Kempfer A. Hirsekorn I. Bilić M. Gil A. Trinks A.M. Merks D. Panáková A. Pombo A. Akalin J.P. Junker D.Y.R. Stainier D. Garfield U. Ohler S.A. Lacadie
25. November 2021 / Nature Cell-type specialization is encoded by specific chromatin topologies W. Winick-Ng A. Kukalev I. Harabula L. Zea-Redondo D. Szabó M. Meijer L. Serebreni Y. Zhang S. Bianco A.M. Chiariello I. Irastorza-Azcarate C.J. Thieme T.M. Sparks S. Carvalho L. Fiorillo F. Musella E. Irani E.T. Triglia A.A. Kolodziejczyk A. Abentung G. Apostolova E.J. Paul V. Franke R. Kempfer A. Akalin S.A. Teichmann G. Dechant M.A. Ungless M. Nicodemi L. Welch G. Castelo-Branco A. Pombo
12. Oktober 2023 / Mol Syst Biol SLAM-Drop-seq reveals mRNA kinetic rates throughout the cell cycle H. Liu R. Arsiè D. Schwabe M. Schilling I. Minia J. Alles A. Boltengagen C. Kocks M. Falcke N. Friedman M. Landthaler N. Rajewsky
01. April 2008 / Nat Biotechnol Discovering microRNAs from deep sequencing data using miRDeep M.R. Friedlaender W. Chen C. Adamidi J. Maaskola R. Einspanier S. Knespel N. Rajewsky
10. September 2018 / Dev Cell FACT sets a barrier for cell fate reprogramming in Caenorhabditis elegans and human cells E. Kolundzic A. Ofenbauer S.I. Bulut B. Uyar G. Baytek A. Sommermeier S. Seelk M. He A. Hirsekorn D. Vucicevic A. Akalin S. Diecke S.A. Lacadie B. Tursun
20. Juni 2019 / Nucleic Acids Res HOT or not: examining the basis of high-occupancy target regions K. Wreczycka V. Franke B. Uyar R. Wurmus S. Bulut B. Tursun A. Akalin
01. Dezember 2019 / Aging Cell The conserved histone chaperone LIN-53 is required for normal lifespan and maintenance of muscle integrity in Caenorhabditis elegans. S. Müthel B. Uyar M. He A. Krause B. Vitrinel S. Bulut D. Vasiljevic I. Marchal S. Kempa A. Akalin B. Tursun
16. Oktober 2017 / Mol Syst Biol RNA polymerase II primes Polycomb-repressed developmental genes throughout terminal neuronal differentiation C. Ferrai E. Torlai Triglia J.R. Risner-Janiczek T. Rito O.J.L. Rackham I. De Santiago A. Kukalev M. Nicodemi A. Akalin M. Li M.A. Ungless A. Pombo