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in Bioinformatics

SSMART: Sequence-structure motif identification for RNA-binding proteins

  • A. Munteanu
  • N. Mukherjee
  • U. Ohler
in Genome Biol

omniCLIP: probabilistic identification of protein-RNA interactions from CLIP-seq data

  • P. Drewe-Boss
  • H.H. Wessels
  • U. Ohler
in Nat Commun

Determinants of promoter and enhancer transcription directionality in metazoans

  • M.M. Ibrahim
  • A. Karabacak
  • A. Glahs
  • E. Kolundzic
  • A. Hirsekorn
  • A. Carda
  • B. Tursun
  • R.P. Zinzen
  • S.A. Lacadie
  • U. Ohler
in Front Plant Sci

Ectopic transplastomic expression of a synthetic MatK gene leads to cotyledon-specific leaf variegation

  • Y. Qu
  • J. Legen
  • J. Arndt
  • S. Henkel
  • G. Hoppe
  • C. Thieme
  • G. Ranzini
  • J.M. Muino
  • A. Weihe
  • U. Ohler
  • G. Weber
  • O. Ostersetzer
  • C. Schmitz-Linneweber
in Cell

Mutations in disordered regions can cause disease by creating dileucine motifs

  • K. Meyer
  • M. Kirchner
  • B. Uyar
  • J.Y. Cheng
  • G. Russo
  • L.R. Hernandez-Miranda
  • A. Szymborska
  • H. Zauber
  • I.M. Rudolph
  • T.E. Willnow
  • A. Akalin
  • V. Haucke
  • H. Gerhardt
  • C. Birchmeier
  • R. Kühn
  • M. Krauss
  • S. Diecke
  • J.M. Pascual
  • M. Selbach
in Dev Cell

FACT sets a barrier for cell fate reprogramming in Caenorhabditis elegans and human cells

  • E. Kolundzic
  • A. Ofenbauer
  • S.I. Bulut
  • B. Uyar
  • G. Baytek
  • A. Sommermeier
  • S. Seelk
  • M. He
  • A. Hirsekorn
  • D. Vucicevic
  • A. Akalin
  • S. Diecke
  • S.A. Lacadie
  • B. Tursun
in RNA Biol

Expanding the map of protein-RNA interaction sites via cell fusion followed by PAR-CLIP

  • F. Hinze
  • P. Drewe-Boss
  • M. Milek
  • U. Ohler
  • M. Landthaler
  • M. Gotthardt
in Nat Ecol Evol

Redundant regulation

  • S.A. Lacadie
  • U. Ohler
in BMC Genomics

Finding RNA structure in the unstructured RBPome

  • Y. Orenstein
  • U. Ohler
  • B. Berger