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/ Stem Cell Rep

Single-cell multi-omics and lineage tracing to dissect cell fate decision-making

  • L. Haghverdi
  • L.S. Ludwig
/ Mol Syst Biol

A single-cell RNA labeling strategy for measuring stress response upon tissue dissociation

  • A. Neuschulz
  • O. Bakina
  • V. Badillo Lisakowski
  • P. Olivares-Chauvet
  • T. Conrad
  • M. Gotthardt
  • H. Kettenmann
  • J.P. Junker
/ BMC Biol

Long-term imaging reveals behavioral plasticity during C. elegans dauer exit

  • F. Preusser
  • A. Neuschulz
  • J.P. Junker
  • N. Rajewsky
  • S. Preibisch
/ PLoS Comput Biol

Towards reliable quantification of cell state velocities

  • V. Marot-Lassauzaie
  • B.J. Bouman
  • F.D. Donaghy
  • Y. Demerdash
  • M.A.G. Essers
  • L. Haghverdi
/ Genome Med

Single-cell transcriptomics reveals common epithelial response patterns in human acute kidney injury

  • C. Hinze
  • C. Kocks
  • J. Leiz
  • N. Karaiskos
  • A. Boltengagen
  • S. Cao
  • C.M. Skopnik
  • J. Klocke
  • J.H. Hardenberg
  • H. Stockmann
  • I. Gotthardt
  • B. Obermayer
  • L. Haghverdi
  • E. Wyler
  • M. Landthaler
  • S. Bachmann
  • A.C. Hocke
  • V. Corman
  • J. Busch
  • W. Schneider
  • N. Himmerkus
  • M. Bleich
  • K.U. Eckardt
  • P. Enghard
  • N. Rajewsky
  • K.M. Schmidt-Ott
/ Nat Genet

Transient activated fibroblasts contribute to zebrafish heart regeneration

  • J.P. Junker
  • D. Panáková
/ Nat Genet

Origin and function of activated fibroblast states during zebrafish heart regeneration

  • B. Hu
  • S. Lelek
  • B. Spanjaard
  • H. El-Sammak
  • M.G. Simões
  • J. Mintcheva
  • H. Aliee
  • R. Schäfer
  • A.M. Meyer
  • F. Theis
  • D.Y.R. Stainier
  • D. Panáková
  • J.P. Junker
/ Cardiovasc Res

Spatial transcriptomics unveils ZBTB11 as a regulator of cardiomyocyte degeneration in arrhythmogenic cardiomyopathy

  • C.J. Boogerd
  • G.P.A. Lacraz
  • Á. Vértesy
  • S.J. van Kampen
  • I. Perini
  • H. de Ruiter
  • D. Versteeg
  • A. Brodehl
  • P. van der Kraak
  • M. Giacca
  • N. de Jonge
  • J.P. Junker
  • A. van Oudenaarden
  • A. Vink
  • E. van Rooij
/ Cell Genom

Single-cell-resolved dynamics of chromatin architecture delineate cell and regulatory states in zebrafish embryos

  • A.C. McGarvey
  • W. Kopp
  • D. Vučićević
  • K. Mattonet
  • R. Kempfer
  • A. Hirsekorn
  • I. Bilić
  • M. Gil
  • A. Trinks
  • A.M. Merks
  • D. Panáková
  • A. Pombo
  • A. Akalin
  • J.P. Junker
  • D.Y.R. Stainier
  • D. Garfield
  • U. Ohler
  • S.A. Lacadie
/ Development

A single-cell atlas of de novo β-cell regeneration reveals the contribution of hybrid β/δ-cells to diabetes recovery in zebrafish

  • S.P. Singh
  • P. Chawla
  • A. Hnatiuk
  • M. Kamel
  • L.D. Silva
  • B. Spanjaard
  • S.E. Eski
  • S. Janjuha
  • P. Olivares-Chauvet
  • O. Kayisoglu
  • F. Rost
  • J. Bläsche
  • A. Kränkel
  • A. Petzold
  • T. Kurth
  • S. Reinhardt
  • J.P. Junker
  • N. Ninov