Scientific Publications Search Search Author Impact Factor Release Date Research Group Search Sort by RelevanceFrom A-ZAuthored onDate/Time RangeRelease date Order AscDesc Adami, Eleonora Dr. (2) Akalin, Altuna Dr. (15) Birchmeier-Kohler, Carmen Prof. Dr. (2) Blachut, Susanne (1) Blume, Alexander Dr. (1) Blüthgen, Nils (1) Chekulaeva, Marina Dr. (3) Daumke, Oliver Prof. Dr. (1) Franke, Vedran Dr. (6) Fritsche, Raphaela Dr. (1) Ghanbari, Mahsa Dr. (1) Hirsekorn, Antje (2) Hübner, Norbert Prof. Dr. (4) Hummel, Oliver (1) Kastelic, Nicolai (2) Kempa, Stefan Dr. (2) Kirchner, Marieluise Dr. (1) Kocks, Christine Dr. (3) Kolesnichenko, Marina Dr. (1) Kukalev, Alexander Dr. (1) Lahmann, Ines Dr. (1) Landthaler, Markus Prof. Dr. (13) Lindberg, Eric Lars-Helge (1) Mastrobuoni, Guido Dr. (1) Mathas, Stephan Dr. (1) Mücke, Michael Benedikt (1) Müller, Thomas Dr. (1) Müthel, Stefanie (1) Obermayer-Wasserscheid, Benedikt Dr. (1) Patone, Giannino Dr. (2) Pombo, Ana Prof. Dr. (1) Rajewsky, Klaus Prof. Dr. (1) Rajewsky, Nikolaus Prof. Dr. (7) Ramberger, Evelyn (1) Scheidereit, Claus Prof. Dr. (1) Selbach, Matthias Prof. Dr. (3) Tursun, Baris Dr. (2) Uyar, Bora Dr. (4) Woehler, Andrew Dr. (2) Wurmus, Ricardo (5) Wyler, Emanuel Dr. (8) (-) Diecke, Sebastian Dr. (1) (-) Maatz, Henrike Dr. (2) (-) Mertins, Philipp Dr. (1) (-) Ohler, Uwe Prof. Dr. (9) 2014 (2) 2015 (1) 2016 (3) (-) 2017 (6) 2018 (5) (-) 2019 (5) 2020 (2) 2021 (3) 2022 (5) 2024 (1) (-) Bioinformatics and Omics Data Science (6) Cellular Neurosciences (1) Computational Regulatory Genomics (18) Developmental Biology / Signal Transduction (1) Genetics and Genomics of Cardiovascular Diseases (6) Non-coding RNAs and Mechanisms of Cytoplasmic Gene Regulation (1) Pluripotent Stem Cells (8) Proteome Dynamics (3) Proteomics (12) Proteomics and Molecular Mechanisms of Neurodegenerative Diseases (1) (-) RNA Biology and Posttranscriptional Regulation (5) Systems Biology Imaging (1) Systems Biology of Gene Regulatory Elements (4) 11 Results: Active Filter: Diecke, Sebastian Dr.Maatz, Henrike Dr.Mertins, Philipp Dr.Ohler, Uwe Prof. Dr.Bioinformatics and Omics Data ScienceRNA Biology and Posttranscriptional Regulation20172019 Sort: Result score Newest to oldest Oldest to newest June 02, 2017 / Nucleic Acids Res RCAS: an RNA centric annotation system for transcriptome-wide regions of interest B. Uyar D. Yusuf R. Wurmus N. Rajewsky U. Ohler A. Akalin April 03, 2017 / Curr Protoc Mol Biol Transcriptome-wide identification of RNA-binding protein binding sites using photoactivatable-ribonucleoside-enhanced crosslinking immunoprecipitation (PAR-CLIP) H. Maatz M. Kolinski N. Hubner M. Landthaler July 03, 2017 / Nucleic Acids Res The RNA workbench: best practices for RNA and high-throughput sequencing bioinformatics in Galaxy B.A. Grüning J. Fallmann D. Yusuf S. Will A. Erxleben F. Eggenhofer T. Houwaart B. Batut P. Videm A. Bagnacani M. Wolfien S.C. Lott Y. Hoogstrate W.R. Hess O. Wolkenhauer S. Hoffmann A. Akalin U. Ohler P.F. Stadler R. Backofen August 01, 2017 / Genome Res DDX54 regulates transcriptome dynamics during DNA damage response M. Milek K. Imami N. Mukherjee F. De Bortoli U. Zinnall O. Hazapis C. Trahan M. Oeffinger F. Heyd U. Ohler M. Selbach M. Landthaler January 03, 2017 / BMC Bioinformatics JACUSA: site-specific identification of RNA editing events from replicate sequencing data M. Piechotta E. Wyler U. Ohler M. Landthaler C. Dieterich September 19, 2017 / Nat Commun RNA localization is a key determinant of neurite-enriched proteome A. Zappulo D. van den Bruck C. Ciolli Mattioli V. Franke K. Imami E. McShane M. Moreno-Estelles L. Calviello A. Filipchyk E. Peguero-Sanchez T. Müller A. Woehler C. Birchmeier E. Merino N. Rajewsky U. Ohler E.O. Mazzoni M. Selbach A. Akalin M. Chekulaeva January 25, 2019 / Nucleic Acids Res Deciphering human ribonucleoprotein regulatory networks N. Mukherjee H.H. Wessels S. Lebedeva M. Sajek M. Ghanbari A. Garzia A. Munteanu D. Yusuf T. Farazi J.I. Hoell K.M. Akat A. Akalin T. Tuschl U. Ohler February 21, 2019 / Genome Biol Reproducible inference of transcription factor footprints in ATAC-seq and DNase-seq datasets using protocol-specific bias modeling A. Karabacak Calviello A. Hirsekorn R. Wurmus D. Yusuf U. Ohler April 09, 2019 / Nat Commun Global identification of functional microRNA-mRNA interactions in Drosophila H.H. Wessels S. Lebedeva A. Hirsekorn R. Wurmus A. Akalin N. Mukherjee U. Ohler June 27, 2019 / Cell The translational landscape of the human heart S. van Heesch F. Witte V. Schneider-Lunitz J.F. Schulz E. Adami A. Faber M. Kirchner H. Maatz S. Blachut C.L. Sandmann M. Kanda C.L. Worth S. Schafer L. Calviello R. Merriott G. Patone O. Hummel E. Wyler B. Obermayer M. Mücke E.L. Lindberg F. Trnka S. Memczak M. Schilling L.E. Felkin P.J.R. Barton N.M. Quaife K. Vanezis S. Diecke M. Mukai N. Mah S.J. Oh A. Kurtz C. Schramm D. Schwinge M. Sebode M. Harakalova F.W. Asselbergs A. Vink R.A. de Weger S. Viswanathan A.A. Widjaja A. Gärtner-Rommel H. Milting C. Dos Remedios C. Knosalla P. Mertins M. Landthaler M. Vingron W.A. Linke J.G. Seidman C.E. Seidman N. Rajewsky U. Ohler S.A. Cook N. Hubner Pagination Current page 1 Page 2 Next page Next › Last page Last »
June 02, 2017 / Nucleic Acids Res RCAS: an RNA centric annotation system for transcriptome-wide regions of interest B. Uyar D. Yusuf R. Wurmus N. Rajewsky U. Ohler A. Akalin
April 03, 2017 / Curr Protoc Mol Biol Transcriptome-wide identification of RNA-binding protein binding sites using photoactivatable-ribonucleoside-enhanced crosslinking immunoprecipitation (PAR-CLIP) H. Maatz M. Kolinski N. Hubner M. Landthaler
July 03, 2017 / Nucleic Acids Res The RNA workbench: best practices for RNA and high-throughput sequencing bioinformatics in Galaxy B.A. Grüning J. Fallmann D. Yusuf S. Will A. Erxleben F. Eggenhofer T. Houwaart B. Batut P. Videm A. Bagnacani M. Wolfien S.C. Lott Y. Hoogstrate W.R. Hess O. Wolkenhauer S. Hoffmann A. Akalin U. Ohler P.F. Stadler R. Backofen
August 01, 2017 / Genome Res DDX54 regulates transcriptome dynamics during DNA damage response M. Milek K. Imami N. Mukherjee F. De Bortoli U. Zinnall O. Hazapis C. Trahan M. Oeffinger F. Heyd U. Ohler M. Selbach M. Landthaler
January 03, 2017 / BMC Bioinformatics JACUSA: site-specific identification of RNA editing events from replicate sequencing data M. Piechotta E. Wyler U. Ohler M. Landthaler C. Dieterich
September 19, 2017 / Nat Commun RNA localization is a key determinant of neurite-enriched proteome A. Zappulo D. van den Bruck C. Ciolli Mattioli V. Franke K. Imami E. McShane M. Moreno-Estelles L. Calviello A. Filipchyk E. Peguero-Sanchez T. Müller A. Woehler C. Birchmeier E. Merino N. Rajewsky U. Ohler E.O. Mazzoni M. Selbach A. Akalin M. Chekulaeva
January 25, 2019 / Nucleic Acids Res Deciphering human ribonucleoprotein regulatory networks N. Mukherjee H.H. Wessels S. Lebedeva M. Sajek M. Ghanbari A. Garzia A. Munteanu D. Yusuf T. Farazi J.I. Hoell K.M. Akat A. Akalin T. Tuschl U. Ohler
February 21, 2019 / Genome Biol Reproducible inference of transcription factor footprints in ATAC-seq and DNase-seq datasets using protocol-specific bias modeling A. Karabacak Calviello A. Hirsekorn R. Wurmus D. Yusuf U. Ohler
April 09, 2019 / Nat Commun Global identification of functional microRNA-mRNA interactions in Drosophila H.H. Wessels S. Lebedeva A. Hirsekorn R. Wurmus A. Akalin N. Mukherjee U. Ohler
June 27, 2019 / Cell The translational landscape of the human heart S. van Heesch F. Witte V. Schneider-Lunitz J.F. Schulz E. Adami A. Faber M. Kirchner H. Maatz S. Blachut C.L. Sandmann M. Kanda C.L. Worth S. Schafer L. Calviello R. Merriott G. Patone O. Hummel E. Wyler B. Obermayer M. Mücke E.L. Lindberg F. Trnka S. Memczak M. Schilling L.E. Felkin P.J.R. Barton N.M. Quaife K. Vanezis S. Diecke M. Mukai N. Mah S.J. Oh A. Kurtz C. Schramm D. Schwinge M. Sebode M. Harakalova F.W. Asselbergs A. Vink R.A. de Weger S. Viswanathan A.A. Widjaja A. Gärtner-Rommel H. Milting C. Dos Remedios C. Knosalla P. Mertins M. Landthaler M. Vingron W.A. Linke J.G. Seidman C.E. Seidman N. Rajewsky U. Ohler S.A. Cook N. Hubner