Scientific Publications Search Search Author Impact Factor Release Date Research Group Search Sort by RelevanceFrom A-ZAuthored onDate/Time RangeRelease date Order AscDesc Adami, Eleonora Dr. (3) Akalin, Altuna Dr. (14) Altmueller, Janine Dr.med. (3) Barke, Niclas (1) Beule, Dieter Dr. (7) Birchmeier-Kohler, Carmen Prof. Dr. (2) Blachut, Susanne (1) Blume, Alexander Dr. (1) Blüthgen, Nils (6) Borodina, Tatiana Dr. (2) Burkert, Christian Martin (1) Chekulaeva, Marina Dr. (3) Chen, Chia-Yu (1) Chen, Wei Prof. Dr. (3) Del Giudice, Simone (2) Deter, Aylina (1) Falcke, Martin Prof. Dr. (1) Faxel, Miriam (1) Franke, Vedran Dr. (5) Freimuth, Jonas (1) Fritsche, Raphaela Dr. (1) Ghanbari, Mahsa Dr. (5) Gil, Marine (1) Golusik, Sabrina (1) Gotthardt, Michael Prof. Dr. (3) Graf, Robin Dr. (1) Grobe, Jenny (1) Heinemann, Udo Prof. Dr. (3) Henssen, Anton Prof. Dr. med. (1) Hinz, Michael Dr. (1) Hinze, Christian Dr. med. Dipl.-Math. (1) Hirsekorn, Antje (12) Hübner, Norbert Prof. Dr. (6) Hummel, Oliver (1) Junker, Jan Philipp Prof. Dr. (2) Kastelic, Nicolai (4) Kaufmann, Tom (1) Kempa, Stefan Dr. (8) Kirchner, Marieluise Dr. (3) Kocks, Christine Dr. (5) Kunz, Severine Dr. (1) Lacadie, Scott Allen Dr. (10) Lahmann, Ines Dr. (1) Landthaler, Markus Prof. Dr. (116) Lindberg, Eric Lars-Helge (1) Mastrobuoni, Guido Dr. (8) Merks, Anne Margarete Dr. (1) Mertins, Philipp Dr. (2) Minia, Igor Dr. (5) Mintcheva, Janita (1) Monti, Remo (3) Müller, Thomas Dr. (1) Müthel, Stefanie (1) Neuschulz, Anika (1) Obermayer-Wasserscheid, Benedikt Dr. (11) Ofenbauer, Andreas Dr. (1) Oliveras Martinez, Anna Dr. (1) Panakova, Daniela Dr. (1) Patone, Giannino Dr. (1) Pombo, Ana Prof. Dr. (1) Preibisch, Stephan Dr. (1) Quedenau, Claudia (3) Radke, Michael Dr. (1) Rajewsky, Klaus Prof. Dr. (1) Rajewsky, Nikolaus Prof. Dr. (22) Rautenstrauch, Pia Josefine (2) Röefzaad, Claudia (1) Ruiz Orera, Jorge Dr. (1) Rybak-Wolf, Agnieszka Dr. (3) Sander, Maike Prof. Dr. (1) Scharek, Nadine (1) Scheidereit, Claus Prof. Dr. (1) Schmitt, Clemens Prof. Dr. (1) Schütz, Anja Dr. (3) Schwarz, Roland Dr. (3) Selbach, Matthias Prof. Dr. (19) Spanjaard, Bastiaan Dr. (1) Sprink, Thiemo Dr. (1) Streck, Adam Dr. (1) Teixeira Alves, Luiz Gustavo Dr. (6) Tursun, Baris Dr. (2) Uyar, Bora Dr. (3) Villamil, Gabriel (1) Vucicevic, Dubravka (3) Wanker, Erich Prof. Dr. (2) Wei, Tzu Ting (1) Woehler, Andrew Dr. (2) Wolf, Jana Prof. Dr. (1) Wurmus, Ricardo (5) Wyler, Emanuel Dr. (53) Zauber, Henrik Dr. (4) Zenkner, Martina (1) Zinzen, Robert Patrick Dr. (3) (-) Diecke, Sebastian Dr. (2) (-) Herzog, Margareta (1) (-) Maatz, Henrike Dr. (3) (-) Ohler, Uwe Prof. Dr. (137) 1999 (2) 2000 (3) 2001 (2) 2002 (1) 2004 (2) 2005 (1) 2006 (6) 2007 (5) 2008 (1) 2009 (4) 2010 (9) 2011 (7) 2012 (10) 2013 (8) 2014 (8) 2015 (5) 2016 (8) 2017 (14) 2018 (9) 2019 (6) 2020 (9) 2021 (6) 2022 (15) 2023 (5) Advanced Light Microscopy (1) AG Müller/Dechend (ECRC) (8) Anchored Signalling (2) Animal Phenotyping (2) Bioinformatics and Omics Data Science (13) Cellular Neurosciences (1) Clinical Research Unit (1) (-) Computational Regulatory Genomics (138) Developmental Biology / Signal Transduction (4) Electron Microscopy (1) Epigenetic Regulation and Chromatin Architecture (1) From Cell States to Function (1) Genetics and Genomics of Cardiovascular Diseases (24) Genetics of Congenital Heart Disease (1) Genome Diversification & Integrity (1) Genome Engineering & Disease Models (2) Genomics (4) Host-microbiome factors in cardiovascular disease (1) Hypertension-caused End-Organ Damage (8) Hypertension-Mediated End-Organ Damage (8) Integrative Vascular Biology (1) Mobile DNA (1) Molecular Biology of Peptide Hormones (2) Molecular Cardiovascular Research (3) Molecular Genetics of Chronic Inflammation and Allergic Disease (1) Molecular Physiology of Somatic Sensation (1) Myology (3) Neuroimmunology Laboratory (1) Non-coding RNAs and Mechanisms of Cytoplasmic Gene Regulation (1) Organoids (1) Out-patient Clinic for Neuroimmunology (1) Out-patient Clinic for Pediatric Allergology and Atopic Dermatitis (1) Pancreatic Organoid Research and Disease Modeling (1) Pluripotent Stem Cells (68) Proteome Dynamics (17) Proteomics (1) Proteomics and Metabolomics (1) Proteomics and Molecular Mechanisms of Neurodegenerative Diseases (6) Quantitative Developmental Biology (3) Quantitative Stem Cell Biology (2) (-) RNA Biology and Posttranscriptional Regulation (18) Stem Cell Modeling of Development and Disease (1) Synaptic Transmission and Plasticity (1) Systems Biology Imaging (2) Systems Biology of Gene Regulatory Elements (12) Transgenics (2) Translational Bioinformatics (1) Translational Cardiology and Functional Genomics (6) 146 Results: Active Filter: Diecke, Sebastian Dr.Herzog, MargaretaMaatz, Henrike Dr.Ohler, Uwe Prof. Dr.Computational Regulatory GenomicsRNA Biology and Posttranscriptional Regulation Sort: Result score Newest to oldest Oldest to newest January 13, 2022 / Cell Genom Single-cell-resolved dynamics of chromatin architecture delineate cell and regulatory states in zebrafish embryos A.C. McGarvey W. Kopp D. Vučićević K. Mattonet R. Kempfer A. Hirsekorn I. Bilić M. Gil A. Trinks A.M. Merks D. Panáková A. Pombo A. Akalin J.P. Junker D.Y.R. Stainier D. Garfield U. Ohler S.A. Lacadie February 01, 2022 / Nat Mach Intell Simultaneous dimensionality reduction and integration for single-cell ATAC-seq data using deep learning W. Kopp A. Akalin U. Ohler February 28, 2022 / Dev Cell A single-cell Arabidopsis root atlas reveals developmental trajectories in wild-type and cell identity mutants R. Shahan C.W. Hsu T.M. Nolan B.J. Cole I.W. Taylor L. Greenstreet S. Zhang A. Afanassiev A.H.C. Vlot G. Schiebinger P.N. Benfey U. Ohler March 15, 2022 / Cell Rep The BTB transcription factors ZBTB11 and ZFP131 maintain pluripotency by repressing pro-differentiation genes G. Garipler C. Lu Al. Morrissey L.S. Lopez-Zepeda Y. Pei S.E. Vidal A.P. Zen Petisco Fiore B. Aydin M. Stadtfeld U. Ohler S. Mahony N.E. Sanjana E.O. Mazzoni December 16, 2022 / STAR Protoc Protocol for fast scRNA-seq raw data processing using scKB and non-arbitrary quality control with COPILOT C.W. Hsu R. Shahan T.M. Nolan P.N. Benfey U. Ohler October 14, 2022 / Nucleic Acids Res Cluster-independent marker feature identification from single-cell omics data using SEMITONES A.H.C. Vlot S. Maghsudi U. Ohler July 01, 2022 / Nat Genet Multiomic atlas with functional stratification and developmental dynamics of zebrafish cis-regulatory elements D. Baranasic M. Hörtenhuber P.J. Balwierz T. Zehnder A.K. Mukarram C. Nepal C. Várnai Y. Hadzhiev A. Jimenez-Gonzalez N. Li J. Wragg F.M. D'Orazio D. Relic M. Pachkov N. Díaz B. Hernández-Rodríguez Z. Chen M. Stoiber M. Dong I. Stevens S.E. Ross A. Eagle R. Martin O. Obasaju S. Rastegar A.C. McGarvey W. Kopp E. Chambers D. Wang H.R. Kim R.D. Acemel S. Naranjo M. Łapiński V. Chong S. Mathavan B. Peers T. Sauka-Spengler M. Vingron P. Carninci U. Ohler S.A. Lacadie S.M. Burgess C. Winata F. van Eeden J.M. Vaquerizas J.L. Gómez-Skarmeta D. Onichtchouk B.J. Brown O. Bogdanovic E. van Nimwegen M. Westerfield F.C Wardle C.O. Daub B. Lenhard F. Müller July 01, 2022 / Nat Biotechnol Standardized annotation of translated open reading frames J.M. Mudge J. Ruiz-Orera J.R. Prensner M.A. Brunet F. Calvet I. Jungreis Jo.M. Gonzalez M. Magrane T.F. Martinez J.F. Schulz Y.T. Yang M.M. Albà J.L. Aspden P.V. Baranov A.A. Bazzini E. Bruford M.J. Martin L. Calviello A.R. Carvunis J. Chen J.P. Couso E.W. Deutsch P. Flicek A. Frankish M. Gerstein N. Hubner N.T. Ingolia M. Kellis G. Menschaert R.L. Moritz U. Ohler X. Roucou A. Saghatelian J.S. Weissman S. van Heesch January 01, 2017 / Latest Thinking How are different transcripts in our genome translated into proteins? U. Ohler February 08, 2023 / Cell Genom Altered and allele-specific open chromatin landscape reveals epigenetic and genetic regulators of innate immunity in COVID-19 B. Zhang Z. Zhang V.A.C.M. Koeken S. Kumar M. Aillaud H.C. Tsay Z. Liu A.R.M. Kraft C.F. Soon I. Odak B. Bošnjak A. Vlot M.A. Swertz U. Ohler R. Geffers T. Illig J. Huehn A.E. Saliba L.E. Sander R. Förster C.J. Xu M. Cornberg L.N. Schulte Y. Li Pagination First page « First Previous page ‹ Previous Page 1 Current page 2 Page 3 Page 4 … Next page Next › Last page Last »
January 13, 2022 / Cell Genom Single-cell-resolved dynamics of chromatin architecture delineate cell and regulatory states in zebrafish embryos A.C. McGarvey W. Kopp D. Vučićević K. Mattonet R. Kempfer A. Hirsekorn I. Bilić M. Gil A. Trinks A.M. Merks D. Panáková A. Pombo A. Akalin J.P. Junker D.Y.R. Stainier D. Garfield U. Ohler S.A. Lacadie
February 01, 2022 / Nat Mach Intell Simultaneous dimensionality reduction and integration for single-cell ATAC-seq data using deep learning W. Kopp A. Akalin U. Ohler
February 28, 2022 / Dev Cell A single-cell Arabidopsis root atlas reveals developmental trajectories in wild-type and cell identity mutants R. Shahan C.W. Hsu T.M. Nolan B.J. Cole I.W. Taylor L. Greenstreet S. Zhang A. Afanassiev A.H.C. Vlot G. Schiebinger P.N. Benfey U. Ohler
March 15, 2022 / Cell Rep The BTB transcription factors ZBTB11 and ZFP131 maintain pluripotency by repressing pro-differentiation genes G. Garipler C. Lu Al. Morrissey L.S. Lopez-Zepeda Y. Pei S.E. Vidal A.P. Zen Petisco Fiore B. Aydin M. Stadtfeld U. Ohler S. Mahony N.E. Sanjana E.O. Mazzoni
December 16, 2022 / STAR Protoc Protocol for fast scRNA-seq raw data processing using scKB and non-arbitrary quality control with COPILOT C.W. Hsu R. Shahan T.M. Nolan P.N. Benfey U. Ohler
October 14, 2022 / Nucleic Acids Res Cluster-independent marker feature identification from single-cell omics data using SEMITONES A.H.C. Vlot S. Maghsudi U. Ohler
July 01, 2022 / Nat Genet Multiomic atlas with functional stratification and developmental dynamics of zebrafish cis-regulatory elements D. Baranasic M. Hörtenhuber P.J. Balwierz T. Zehnder A.K. Mukarram C. Nepal C. Várnai Y. Hadzhiev A. Jimenez-Gonzalez N. Li J. Wragg F.M. D'Orazio D. Relic M. Pachkov N. Díaz B. Hernández-Rodríguez Z. Chen M. Stoiber M. Dong I. Stevens S.E. Ross A. Eagle R. Martin O. Obasaju S. Rastegar A.C. McGarvey W. Kopp E. Chambers D. Wang H.R. Kim R.D. Acemel S. Naranjo M. Łapiński V. Chong S. Mathavan B. Peers T. Sauka-Spengler M. Vingron P. Carninci U. Ohler S.A. Lacadie S.M. Burgess C. Winata F. van Eeden J.M. Vaquerizas J.L. Gómez-Skarmeta D. Onichtchouk B.J. Brown O. Bogdanovic E. van Nimwegen M. Westerfield F.C Wardle C.O. Daub B. Lenhard F. Müller
July 01, 2022 / Nat Biotechnol Standardized annotation of translated open reading frames J.M. Mudge J. Ruiz-Orera J.R. Prensner M.A. Brunet F. Calvet I. Jungreis Jo.M. Gonzalez M. Magrane T.F. Martinez J.F. Schulz Y.T. Yang M.M. Albà J.L. Aspden P.V. Baranov A.A. Bazzini E. Bruford M.J. Martin L. Calviello A.R. Carvunis J. Chen J.P. Couso E.W. Deutsch P. Flicek A. Frankish M. Gerstein N. Hubner N.T. Ingolia M. Kellis G. Menschaert R.L. Moritz U. Ohler X. Roucou A. Saghatelian J.S. Weissman S. van Heesch
January 01, 2017 / Latest Thinking How are different transcripts in our genome translated into proteins? U. Ohler
February 08, 2023 / Cell Genom Altered and allele-specific open chromatin landscape reveals epigenetic and genetic regulators of innate immunity in COVID-19 B. Zhang Z. Zhang V.A.C.M. Koeken S. Kumar M. Aillaud H.C. Tsay Z. Liu A.R.M. Kraft C.F. Soon I. Odak B. Bošnjak A. Vlot M.A. Swertz U. Ohler R. Geffers T. Illig J. Huehn A.E. Saliba L.E. Sander R. Förster C.J. Xu M. Cornberg L.N. Schulte Y. Li