Student Seminar in Systems Biology at the MDC

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Every second Friday, our students present their work and invite fellow students and scientific faculty to join the discussion.

The seminars take place on Fridays at 12:00 Berlin Time. BIMSB welcomes this Seminar as an opportunity to also invite scientists from other research institutions to join.

2021

28 May

Leo Epstein, Harrington lab: "Detection and tracking to analyze endothelial migration and protein colocalization"
Julia Markowski, Schwarz lab: "Towards haplotype-specific chromatin contact maps from GAM"
Lisa Emmenegger, Rajewsky lab: "MicroRNAs function in viral infections: an optogenetic-based DICER perturbation"

7 May

Miriam Faxel (Zinzen lab):"Reconstruction of regulatory networks driving patterned expression in the Drosophila embryo based on spatially resolved single-cell sequencing data"
Simone Del Giudice (Landthaler lab): "Cellular interactions and transcriptional dynamics in cancer and invertebrate development"
Fearghal Donaghy (Haghverdi lab): "Fine-tuning RNA Velocity"

30 Apr 2021

Mirjam van Bentum (Selbach lab): "Profiling cellular signalling by targeted phoshoproteomics”
Iris Marchal (Tursun lab): "Characterization of the histone chaperone FACT as a safeguard of cellular identity in C. elegans"

16 Apr 2021

Konstantinos Papadakis (Zinzen lab): "Conservation of neurogenic regulatory nodes from fly to mouse"
Robert Kerridge (Selbach lab): "Proteomic Analysis of Altered Translation in Autism Spectrum Disorder"
Safak Bayram (Kempa lab): "Tracing glutaminase-inhibitor resistance at atomic resolution"

19 Mar 2021 (Virtual Meeting)

Mariam Hammoud (Ohler lab): "Transcriptional regulatory dynamics during zebrafish embryonic development"
Stefan Stefanov (Meyer lab): "The advantages of full circRNA sequence knowledge in determining functional associations"
Artem Baranovskii (Chekulaeva lab): "mRNA stability as a determinant of mRNA's subcellular localization in neurons"

5 Mar 2021 (Virtual Meeting)

Erik Becher (Chekulaeva lab, BIMSB): "Modeling amyotrophic lateral sclerosis: generating functional motoneurons from patient-derived stem cells"
Jonas Brandenburg (Landthaler lab, BIMSB): "Dynamics of gene regulatory element usage across early sea urchin development"
Dominika Vojtasova (Pombo lab, BIMSB): "Effects of Shank3 and sleep deprivation on genome architecture in the mouse hippocampus"

19 Feb 2021 (Virtual Meeting)

Teresa Melder (Selbach lab, MDC): Development of a Cellulose-based High-throughput Screen Targeting the Interaction Landscape of Pharmaceutical Compounds Applying Shotgun Proteomics
Remo Monti (Ohler lab, BIMSB): Identifying key metabolic regulators from large exome sequencing data using functionally informed kernel-based association tests

Jan 22 2021 (Virtual Meeting)

Lorena Sofia Lopez Zepeda (Ohler lab, BIMSB): TBA
Trendelina Rrustemi (Selbach lab, BIMSB): TBA
Robert Bücking (Meyer lab, BIMSB): Prediction of RNA-RNA interactions in phage infected bacteria

Feb 5 2021 (Virtual Meeting)

Jonas Peters (Landthaler lab, BIMSB): How individual eIF4F proteins shape the translation profile
Irene Mota Gomez Argente (Lupianez lab, BIMSB):3D-Chromatin dynamics during mammalian sex determination

Jan 22 2021 (Virtual Meeting)

Lorena Sofia Lopez Zepeda (Ohler lab, BIMSB):Understanding gene regulation using CRISPR Screens
Trendelina Rrustemi (Selbach lab, BIMSB):Investigating mutated phosphorylation sites within intrinsically disordered regions using a peptide based interaction screen
Robert Bücking (Meyer lab, BIMSB):Prediction of RNA-RNA interactions in phage infected bacteria

Jan 8 2021(Virtual Meeting)

Maria Stella de Biase (Schwarz lab, BIMSB): Nasal gene expression provides insights into smoking injury response and disease status

2020

Dec 9 2020 (Virtual Meeting)

Nina Mitic (Junker lab, BIMSB): Adult neurogenesis in the zebrafish brain at single cell resolution
Chiara Anania (Lupianez lab, BIMSB): In vivo dissection of a multi-CTCF element reveals developmental principles of chromatin boundary function

Nov 13 2020 (Virtual Meeting)

Samantha Mendonsa (AG Chekulaeva)
Izabela Harabula (AG Pombo)

Oct 30 (Virtual Meeting)

Ismail Özcan (AG Tursun): Genetic Dissection of Direct Cellular Reprogramming in vivo
Nora Fresmann (AG Junker): Dissecting cell type composition and cell lineages in zebrafish models of neuroblastoma

Oct 16 (Virtual Meeting)