Wissenschaftliche Publikationen Suche Suche Autor/in Forschungsgruppe Veröffentlichungsdatum Suchen Sortieren nach RelevanceFrom A-ZAuthored onDate/Time RangeRelease date Reihenfolge AufsteigendAbsteigend Birchmeier-Kohler, Carmen Prof. Dr. (1) Blume, Alexander Dr. (1) Chekulaeva, Marina Dr. (1) Franke, Vedran Dr. (2) Kocks, Christine Dr. (1) Kukalev, Alexander Dr. (1) Landthaler, Markus Prof. Dr. (1) Ohler, Uwe Prof. Dr. (3) Pombo, Ana Prof. Dr. (1) Rajewsky, Nikolaus Prof. Dr. (3) Selbach, Matthias Prof. Dr. (1) Spuler, Simone Prof. (1) Uyar, Bora Dr. (2) Woehler, Andrew Dr. (1) Wurmus, Ricardo (1) Wyler, Emanuel Dr. (1) (-) Akalin, Altuna Dr. (9) (-) Müller, Thomas Dr. (1) (-) Bioinformatics and Omics Data Science (9) Bioinformatik der Genregulation (3) Entwicklungsbiologie / Signaltransduktion in Nerven und Muskelzellen (5) Epigenetische Regulation und Chromatinstruktur (2) Genetik metabolischer und reproduktiver Störungen (1) Genetik und Genomik von Herz- Kreislauferkrankungen (1) Nicht-Kodierende RNAs und Mechanismen der Genregulation im Cytoplasma (1) Proteom Dynamik (1) RNA Biologie und Posttranscriptionale Regulation (1) Systembiologie von Gen-regulatorischen Elementen (3) Systems Biology Imaging (1) 2006 (2) 2007 (1) 2008 (1) (-) 2009 (3) 2010 (3) 2011 (1) 2012 (4) 2013 (3) 2014 (3) 2015 (4) (-) 2017 (6) 2018 (6) 2020 (7) 2021 (8) 2022 (6) 2023 (6) 2024 (1) 9 Ergebnisse: Active Filter: Akalin, Altuna Dr.Müller, Thomas Dr.Bioinformatics and Omics Data Science20092017 Sortieren: Treffgenauigkeit Neueste nach älteste Älteste nach neueste 03. Juli 2017 / Nucleic Acids Res The RNA workbench: best practices for RNA and high-throughput sequencing bioinformatics in Galaxy B.A. Grüning J. Fallmann D. Yusuf S. Will A. Erxleben F. Eggenhofer T. Houwaart B. Batut P. Videm A. Bagnacani M. Wolfien S.C. Lott Y. Hoogstrate W.R. Hess O. Wolkenhauer S. Hoffmann A. Akalin U. Ohler P.F. Stadler R. Backofen 10. November 2017 / J Biotechnol Strategies for analyzing bisulfite sequencing data K. Wreczycka A. Gosdschan D. Yusuf B. Grüning Y. Assenov A. Akalin 19. September 2017 / Nat Commun RNA localization is a key determinant of neurite-enriched proteome A. Zappulo D. van den Bruck C. Ciolli Mattioli V. Franke K. Imami E. McShane M. Moreno-Estelles L. Calviello A. Filipchyk E. Peguero-Sanchez T. Müller A. Woehler C. Birchmeier E. Merino N. Rajewsky U. Ohler E.O. Mazzoni M. Selbach A. Akalin M. Chekulaeva 16. Oktober 2017 / Mol Syst Biol RNA polymerase II primes Polycomb-repressed developmental genes throughout terminal neuronal differentiation C. Ferrai E. Torlai Triglia J.R. Risner-Janiczek T. Rito O.J.L. Rackham I. De Santiago A. Kukalev M. Nicodemi A. Akalin M. Li M.A. Ungless A. Pombo 31. Oktober 2017 / Genome Biol Widespread activation of antisense transcription of the host genome during herpes simplex virus 1 infection E. Wyler J. Menegatti V. Franke C. Kocks A. Boltengagen T. Hennig K. Theil A. Rutkowski C. Ferrai L. Baer L. Kermas C. Friedel N. Rajewsky A. Akalin L. Dölken F. Grässer M. Landthaler 02. Juni 2017 / Nucleic Acids Res RCAS: an RNA centric annotation system for transcriptome-wide regions of interest B. Uyar D. Yusuf R. Wurmus N. Rajewsky U. Ohler A. Akalin 01. September 2009 / Dev Dyn Zebrafish enhancer detection (ZED) vector: a new tool to facilitate transgenesis and the functional analysis of cis-regulatory regions in zebrafish J. Bessa J.J. Tena E. de la Calle-Mustienes A. Fernandez-Minan S. Naranjo A. Fernandez L. Montoliu A. Akalin B. Lenhard F. Casares J.L. Gomez-Skarmeta 01. Mai 2009 / Nat Genet The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line H Suzuki ARR Forrest E van Nimwegen CO Daub PJ Balwierz KM Irvine T Lassmann T Ravasi Y Hasegawa MJL de Hoon S Katayama K Schroder P Carninci Y Tomaru M Kanamori-Katayama A Kubosaki A. Akalin Y Ando E Arner M Asada H Asahara T Bailey VB Bajic D Bauer AG Beckhouse N Bertin J Björkegren F Brombacher E Bulger AM Chalk J Chiba N Cloonan A Dawe J Dostie PG Engstroem M Essack GJ Faulkner JL Fink D Fredman K Fujimori M Furuno T Gojobori J Gough SM Grimmond M Gustafsson M Hashimoto T Hashimoto M Hatakeyama S Heinzel W Hide O Hofmann M Hörnquist L Huminiecki K Ikeo N Imamoto S Inoue Y Inoue R Ishihara T Iwayanagi A Jacobsen M Kaur H Kawaji MC Kerr R Kimura S Kimura Y Kimura H Kitano H Koga T Kojima S Kondo T Konno A Krogh A Kruger A Kumar B Lenhard A Lennartsson M Lindow M Lizio C Macpherson N Maeda CA Maher M Maqungo J Mar NA Matigian H Matsuda JS Mattick S Meier S Miyamoto E Miyamoto-Sato K Nakabayashi Y Nakachi M Nakano S Nygaard T Okayama Y Okazaki H Okuda-Yabukami V Orlando J Otomo M Pachkov N Petrovsky C Plessy J Quackenbush A Radovanovic M Rehli R Saito A Sandelin S Schmeier C Schönbach AS Schwartz CA Semple M Sera J Severin K Shirahige C Simons G St Laurent M Suzuki T Suzuki MJ Sweet RJ Taft S Takeda Y Takenaka K Tan MS Taylor RD Teasdale J Tegnér S Teichmann E Valen C Wahlestedt K Waki A Waterhouse CA Wells O Winther L Wu K Yamaguchi H Yanagawa J Yasuda M Zavolan DA Hume T Arakawa S Fukuda K Imamura C Kai A Kaiho T Kawashima C Kawazu Y Kitazume M Kojima H Miura K Murakami M Murata N Ninomiya H Nishiyori S Noma C Ogawa T Sano C Simon M Tagami Y Takahashi J Kawai Y Hayashizaki 19. April 2009 / Genome Biol Transcriptional features of genomic regulatory blocks A. Akalin D. Fredman E Arner X Dong JC Bryne H. Suzuki CO Daub Y Hayashizaki B Lenhard
03. Juli 2017 / Nucleic Acids Res The RNA workbench: best practices for RNA and high-throughput sequencing bioinformatics in Galaxy B.A. Grüning J. Fallmann D. Yusuf S. Will A. Erxleben F. Eggenhofer T. Houwaart B. Batut P. Videm A. Bagnacani M. Wolfien S.C. Lott Y. Hoogstrate W.R. Hess O. Wolkenhauer S. Hoffmann A. Akalin U. Ohler P.F. Stadler R. Backofen
10. November 2017 / J Biotechnol Strategies for analyzing bisulfite sequencing data K. Wreczycka A. Gosdschan D. Yusuf B. Grüning Y. Assenov A. Akalin
19. September 2017 / Nat Commun RNA localization is a key determinant of neurite-enriched proteome A. Zappulo D. van den Bruck C. Ciolli Mattioli V. Franke K. Imami E. McShane M. Moreno-Estelles L. Calviello A. Filipchyk E. Peguero-Sanchez T. Müller A. Woehler C. Birchmeier E. Merino N. Rajewsky U. Ohler E.O. Mazzoni M. Selbach A. Akalin M. Chekulaeva
16. Oktober 2017 / Mol Syst Biol RNA polymerase II primes Polycomb-repressed developmental genes throughout terminal neuronal differentiation C. Ferrai E. Torlai Triglia J.R. Risner-Janiczek T. Rito O.J.L. Rackham I. De Santiago A. Kukalev M. Nicodemi A. Akalin M. Li M.A. Ungless A. Pombo
31. Oktober 2017 / Genome Biol Widespread activation of antisense transcription of the host genome during herpes simplex virus 1 infection E. Wyler J. Menegatti V. Franke C. Kocks A. Boltengagen T. Hennig K. Theil A. Rutkowski C. Ferrai L. Baer L. Kermas C. Friedel N. Rajewsky A. Akalin L. Dölken F. Grässer M. Landthaler
02. Juni 2017 / Nucleic Acids Res RCAS: an RNA centric annotation system for transcriptome-wide regions of interest B. Uyar D. Yusuf R. Wurmus N. Rajewsky U. Ohler A. Akalin
01. September 2009 / Dev Dyn Zebrafish enhancer detection (ZED) vector: a new tool to facilitate transgenesis and the functional analysis of cis-regulatory regions in zebrafish J. Bessa J.J. Tena E. de la Calle-Mustienes A. Fernandez-Minan S. Naranjo A. Fernandez L. Montoliu A. Akalin B. Lenhard F. Casares J.L. Gomez-Skarmeta
01. Mai 2009 / Nat Genet The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line H Suzuki ARR Forrest E van Nimwegen CO Daub PJ Balwierz KM Irvine T Lassmann T Ravasi Y Hasegawa MJL de Hoon S Katayama K Schroder P Carninci Y Tomaru M Kanamori-Katayama A Kubosaki A. Akalin Y Ando E Arner M Asada H Asahara T Bailey VB Bajic D Bauer AG Beckhouse N Bertin J Björkegren F Brombacher E Bulger AM Chalk J Chiba N Cloonan A Dawe J Dostie PG Engstroem M Essack GJ Faulkner JL Fink D Fredman K Fujimori M Furuno T Gojobori J Gough SM Grimmond M Gustafsson M Hashimoto T Hashimoto M Hatakeyama S Heinzel W Hide O Hofmann M Hörnquist L Huminiecki K Ikeo N Imamoto S Inoue Y Inoue R Ishihara T Iwayanagi A Jacobsen M Kaur H Kawaji MC Kerr R Kimura S Kimura Y Kimura H Kitano H Koga T Kojima S Kondo T Konno A Krogh A Kruger A Kumar B Lenhard A Lennartsson M Lindow M Lizio C Macpherson N Maeda CA Maher M Maqungo J Mar NA Matigian H Matsuda JS Mattick S Meier S Miyamoto E Miyamoto-Sato K Nakabayashi Y Nakachi M Nakano S Nygaard T Okayama Y Okazaki H Okuda-Yabukami V Orlando J Otomo M Pachkov N Petrovsky C Plessy J Quackenbush A Radovanovic M Rehli R Saito A Sandelin S Schmeier C Schönbach AS Schwartz CA Semple M Sera J Severin K Shirahige C Simons G St Laurent M Suzuki T Suzuki MJ Sweet RJ Taft S Takeda Y Takenaka K Tan MS Taylor RD Teasdale J Tegnér S Teichmann E Valen C Wahlestedt K Waki A Waterhouse CA Wells O Winther L Wu K Yamaguchi H Yanagawa J Yasuda M Zavolan DA Hume T Arakawa S Fukuda K Imamura C Kai A Kaiho T Kawashima C Kawazu Y Kitazume M Kojima H Miura K Murakami M Murata N Ninomiya H Nishiyori S Noma C Ogawa T Sano C Simon M Tagami Y Takahashi J Kawai Y Hayashizaki
19. April 2009 / Genome Biol Transcriptional features of genomic regulatory blocks A. Akalin D. Fredman E Arner X Dong JC Bryne H. Suzuki CO Daub Y Hayashizaki B Lenhard