Wissenschaftliche Publikationen Suche Suche Autor/in Forschungsgruppe Veröffentlichungsdatum Suchen Sortieren nach RelevanceFrom A-ZAuthored onDate/Time RangeRelease date Reihenfolge AufsteigendAbsteigend Birchmeier-Kohler, Carmen Prof. Dr. (1) Blume, Alexander Dr. (1) Chekulaeva, Marina Dr. (1) Fielitz, Jens Dr. (1) Franke, Vedran Dr. (2) Kocks, Christine Dr. (1) Kukalev, Alexander Dr. (1) Landthaler, Markus Prof. Dr. (1) Mahmoodzadeh, Shokoufeh PD Dr. (1) Ohler, Uwe Prof. Dr. (3) Pombo, Ana Prof. Dr. (1) Rajewsky, Nikolaus Prof. Dr. (3) Selbach, Matthias Prof. Dr. (1) Spuler, Simone Prof. (1) Uyar, Bora Dr. (2) Woehler, Andrew Dr. (1) Wurmus, Ricardo (1) Wyler, Emanuel Dr. (1) (-) Akalin, Altuna Dr. (10) (-) Müller, Thomas Dr. (1) (-) Bioinformatics and Omics Data Science (10) Bioinformatik der Genregulation (3) Entwicklungsbiologie / Signaltransduktion in Nerven und Muskelzellen (5) Epigenetische Regulation und Chromatinstruktur (2) Nicht-Kodierende RNAs und Mechanismen der Genregulation im Cytoplasma (1) Proteom Dynamik (1) RNA Biologie und Posttranscriptionale Regulation (1) Systembiologie von Gen-regulatorischen Elementen (3) Systems Biology Imaging (1) 2006 (2) 2007 (1) 2008 (1) 2009 (3) 2010 (3) 2011 (1) (-) 2012 (4) 2013 (3) 2014 (3) 2015 (4) (-) 2017 (6) 2018 (6) 2019 (9) 2020 (7) 2021 (8) 2022 (6) 2023 (6) 2024 (1) 10 Ergebnisse: Active Filter: Akalin, Altuna Dr.Müller, Thomas Dr.Bioinformatics and Omics Data Science20122017 Sortieren: Treffgenauigkeit Neueste nach älteste Älteste nach neueste 03. Juli 2017 / Nucleic Acids Res The RNA workbench: best practices for RNA and high-throughput sequencing bioinformatics in Galaxy B.A. Grüning J. Fallmann D. Yusuf S. Will A. Erxleben F. Eggenhofer T. Houwaart B. Batut P. Videm A. Bagnacani M. Wolfien S.C. Lott Y. Hoogstrate W.R. Hess O. Wolkenhauer S. Hoffmann A. Akalin U. Ohler P.F. Stadler R. Backofen 10. November 2017 / J Biotechnol Strategies for analyzing bisulfite sequencing data K. Wreczycka A. Gosdschan D. Yusuf B. Grüning Y. Assenov A. Akalin 19. September 2017 / Nat Commun RNA localization is a key determinant of neurite-enriched proteome A. Zappulo D. van den Bruck C. Ciolli Mattioli V. Franke K. Imami E. McShane M. Moreno-Estelles L. Calviello A. Filipchyk E. Peguero-Sanchez T. Müller A. Woehler C. Birchmeier E. Merino N. Rajewsky U. Ohler E.O. Mazzoni M. Selbach A. Akalin M. Chekulaeva 16. Oktober 2017 / Mol Syst Biol RNA polymerase II primes Polycomb-repressed developmental genes throughout terminal neuronal differentiation C. Ferrai E. Torlai Triglia J.R. Risner-Janiczek T. Rito O.J.L. Rackham I. De Santiago A. Kukalev M. Nicodemi A. Akalin M. Li M.A. Ungless A. Pombo 31. Oktober 2017 / Genome Biol Widespread activation of antisense transcription of the host genome during herpes simplex virus 1 infection E. Wyler J. Menegatti V. Franke C. Kocks A. Boltengagen T. Hennig K. Theil A. Rutkowski C. Ferrai L. Baer L. Kermas C. Friedel N. Rajewsky A. Akalin L. Dölken F. Grässer M. Landthaler 02. Juni 2017 / Nucleic Acids Res RCAS: an RNA centric annotation system for transcriptome-wide regions of interest B. Uyar D. Yusuf R. Wurmus N. Rajewsky U. Ohler A. Akalin 03. Oktober 2012 / Genome Biol methylKit: a comprehensive R package for the analysis of genome-wide DNA methylation profiles A. Akalin M. Kormaksson S. Li F.E. Garrett-Bakelman M.E. Figueroa A. Melnick C.E. Mason 21. Juni 2012 / PLoS Genet Base-pair resolution DNA methylation sequencing reveals profoundly divergent epigenetic landscapes in acute myeloid leukemia A. Akalin F.E. Garrett-Bakelman M. Kormaksson J. Busuttil L. Zhang I. Khrebtukova T.A. Milne Y. Huang D. Biswas J.L. Hess C.D. Allis R.G. Roeder P.J.M. Valk B. Loewenberg R. Delwel H.F. Fernandez E. Paietta M.S. Tallman G.P. Schroth C.E. Mason A. Melnick M.E. Figueroa 17. April 2012 / Proc Natl Acad Sci U S A Conservation and divergence in Toll-like receptor 4-regulated gene expression in primary human versus mouse macrophages K. Schroder K.M. Irvine M.S. Taylor N.J. Bokil K.A. Le Cao K.A. Masterman L.I. Labzin C.A. Semple R. Kapetanovic L. Fairbairn A. Akalin G.J. Faulkner J.K. Baillie M. Gongora C.O. Daub H. Kawaji G.J. McLachlan N. Goldman S.M. Grimmond P. Carninci H. Suzuki Y. Hayashizaki B. Lenhard D.A. Hume M.J. Sweet 01. März 2012 / Genome Res Promoter architecture of mouse olfactory receptor genes C. Plessy G. Pascarella N. Bertin A. Akalin C. Carrieri A. Vassalli D. Lazarevic J. Severin C. Vlachouli R. Simone G.J. Faulkner J. Kawai C.O. Daub S. Zucchelli Y. Hayashizaki P. Mombaerts B. Lenhard S. Gustincich P. Carninci
03. Juli 2017 / Nucleic Acids Res The RNA workbench: best practices for RNA and high-throughput sequencing bioinformatics in Galaxy B.A. Grüning J. Fallmann D. Yusuf S. Will A. Erxleben F. Eggenhofer T. Houwaart B. Batut P. Videm A. Bagnacani M. Wolfien S.C. Lott Y. Hoogstrate W.R. Hess O. Wolkenhauer S. Hoffmann A. Akalin U. Ohler P.F. Stadler R. Backofen
10. November 2017 / J Biotechnol Strategies for analyzing bisulfite sequencing data K. Wreczycka A. Gosdschan D. Yusuf B. Grüning Y. Assenov A. Akalin
19. September 2017 / Nat Commun RNA localization is a key determinant of neurite-enriched proteome A. Zappulo D. van den Bruck C. Ciolli Mattioli V. Franke K. Imami E. McShane M. Moreno-Estelles L. Calviello A. Filipchyk E. Peguero-Sanchez T. Müller A. Woehler C. Birchmeier E. Merino N. Rajewsky U. Ohler E.O. Mazzoni M. Selbach A. Akalin M. Chekulaeva
16. Oktober 2017 / Mol Syst Biol RNA polymerase II primes Polycomb-repressed developmental genes throughout terminal neuronal differentiation C. Ferrai E. Torlai Triglia J.R. Risner-Janiczek T. Rito O.J.L. Rackham I. De Santiago A. Kukalev M. Nicodemi A. Akalin M. Li M.A. Ungless A. Pombo
31. Oktober 2017 / Genome Biol Widespread activation of antisense transcription of the host genome during herpes simplex virus 1 infection E. Wyler J. Menegatti V. Franke C. Kocks A. Boltengagen T. Hennig K. Theil A. Rutkowski C. Ferrai L. Baer L. Kermas C. Friedel N. Rajewsky A. Akalin L. Dölken F. Grässer M. Landthaler
02. Juni 2017 / Nucleic Acids Res RCAS: an RNA centric annotation system for transcriptome-wide regions of interest B. Uyar D. Yusuf R. Wurmus N. Rajewsky U. Ohler A. Akalin
03. Oktober 2012 / Genome Biol methylKit: a comprehensive R package for the analysis of genome-wide DNA methylation profiles A. Akalin M. Kormaksson S. Li F.E. Garrett-Bakelman M.E. Figueroa A. Melnick C.E. Mason
21. Juni 2012 / PLoS Genet Base-pair resolution DNA methylation sequencing reveals profoundly divergent epigenetic landscapes in acute myeloid leukemia A. Akalin F.E. Garrett-Bakelman M. Kormaksson J. Busuttil L. Zhang I. Khrebtukova T.A. Milne Y. Huang D. Biswas J.L. Hess C.D. Allis R.G. Roeder P.J.M. Valk B. Loewenberg R. Delwel H.F. Fernandez E. Paietta M.S. Tallman G.P. Schroth C.E. Mason A. Melnick M.E. Figueroa
17. April 2012 / Proc Natl Acad Sci U S A Conservation and divergence in Toll-like receptor 4-regulated gene expression in primary human versus mouse macrophages K. Schroder K.M. Irvine M.S. Taylor N.J. Bokil K.A. Le Cao K.A. Masterman L.I. Labzin C.A. Semple R. Kapetanovic L. Fairbairn A. Akalin G.J. Faulkner J.K. Baillie M. Gongora C.O. Daub H. Kawaji G.J. McLachlan N. Goldman S.M. Grimmond P. Carninci H. Suzuki Y. Hayashizaki B. Lenhard D.A. Hume M.J. Sweet
01. März 2012 / Genome Res Promoter architecture of mouse olfactory receptor genes C. Plessy G. Pascarella N. Bertin A. Akalin C. Carrieri A. Vassalli D. Lazarevic J. Severin C. Vlachouli R. Simone G.J. Faulkner J. Kawai C.O. Daub S. Zucchelli Y. Hayashizaki P. Mombaerts B. Lenhard S. Gustincich P. Carninci