Scientific Publications Search Search Author Impact Factor Release Date Research Group Search Sort by RelevanceFrom A-ZAuthored onDate/Time RangeRelease date Order AscDesc Akalin, Altuna Dr. (73) Altmueller, Janine Dr.med. (1) Annibale, Paolo Dr. (1) Bahry, Ella Dr. (1) Barke, Niclas (1) Berruezo Llacuna, Maria (1) Birchmeier-Kohler, Carmen Prof. Dr. (3) Blume, Alexander Dr. (6) Borodina, Tatiana Dr. (1) Carvalho, Silvia Filipa (1) Chekulaeva, Marina Dr. (2) Chen, Wei Prof. Dr. (1) Chu, Van Trung Dr. (1) Costanza, Mariantonia Dr. (2) Daumke, Oliver Prof. Dr. (4) Del Giudice, Simone (1) Deter, Aylina (1) Diecke, Sebastian Dr. (2) Di Virgilio, Michela Prof. Dr. (2) Driesner, Madlen (1) Escobar Fernandez, Helena Dr. (1) Faxel, Miriam (1) Franke, Vedran Dr. (22) Freimuth, Jonas (1) Gerhardt, Holger Prof. Dr. (1) Ghanbari, Mahsa Dr. (1) Gil, Marine (1) Graf, Robin Dr. (1) Harabula, Izabela-Cezara (1) Haucke, Volker Professor (1) Herzog, Margareta (1) Hinz, Michael Dr. (2) Hirsekorn, Antje (4) Höpken, Uta Elisabeth PD Dr. (2) Hübner, Norbert Prof. Dr. (1) Irastorza Azcarate, Ibai Dr. (1) Junker, Jan Philipp Prof. Dr. (1) Keller, Lisa (1) Kempa, Stefan Dr. (1) Kirchner, Marieluise Dr. (1) Kocks, Christine Dr. (2) Kühn, Ralf Dr. (1) Kukalev, Alexander Dr. (2) Lacadie, Scott Allen Dr. (3) Landthaler, Markus Prof. Dr. (5) Lohse, Martin Prof. Dr. (1) Lusatis, Simone (1) Marg, Andreas Dr. (1) Meijer, Mandy Dr. (1) Merks, Anne Margarete Dr. (1) Mertins, Philipp Dr. (1) Monti, Remo (1) Müller, Thomas Dr. (1) Müthel, Stefanie (3) Ofenbauer, Andreas Dr. (1) Panakova, Daniela Dr. (1) Patarcic, Inga Dr. (1) Patone, Giannino Dr. (1) Pombo, Ana Prof. Dr. (3) Popp, Oliver Dr. (1) Preibisch, Stephan Dr. (1) Prigione, Alessandro Prof. Dr. (1) Quedenau, Claudia (1) Rajewsky, Klaus Prof. Dr. (2) Rajewsky, Nikolaus Prof. Dr. (8) Rathgeber, Anja (1) Rehm, Armin Dr. (1) Roske, Yvette Dr. (1) Rrustemi, Trendelina (1) Rudolph, Ina-Maria Dr. (1) Scheidereit, Claus Prof. Dr. (4) Schmidt-Ullrich, Ruth Dr. (1) Schmitt, Clemens Prof. Dr. (1) Selbach, Matthias Prof. Dr. (5) Serebreni, Leonid Dr. (1) Siffrin, Volker (1) Spuler, Simone Prof. (2) Szabo, Dominik (1) Thieme, Christoph Dr. (1) Tursun, Baris Dr. (4) Uyar, Bora Dr. (15) Vucicevic, Dubravka (2) Willimsky, Gerald Dr. (1) Willnow, Thomas Prof. Dr. (1) Winick-Ng, Warren Dr. (1) Woehler, Andrew Dr. (3) Wurmus, Ricardo (9) Wyler, Emanuel Dr. (4) Zampieri, Niccolo Dr. (1) Zauber, Henrik Dr. (1) Zea Redondo, Luna (1) (-) Janz, Martin Dr. (3) (-) Mathas, Stephan Dr. (3) (-) Ohler, Uwe Prof. Dr. (10) 2017 (3) 2019 (4) 2020 (2) 2022 (3) 2023 (2) Animal Phenotyping (1) (-) Bioinformatics and Omics Data Science (14) Biology of Malignant Lymphomas (96) Cancer Genetics and Cellular Stress Responses (3) Computational Regulatory Genomics (139) Developmental Biology / Signal Transduction (2) Development and Function of Neural Circuits (1) Epigenetic Regulation and Chromatin Architecture (1) Genetics and Genomics of Cardiovascular Diseases (5) Genome Diversification & Integrity (1) Immune Dysregulations in Oncology (1) Immune Regulation and Cancer (5) Mechanism-based Cancer Therapies (7) Microenvironmental Regulation in Autoimmunity and Cancer (2) Molecular Biology of Peptide Hormones (1) Molecular Cardiovascular Research (11) Molecular Oncology (26) Non-coding RNAs and Mechanisms of Cytoplasmic Gene Regulation (1) Pancreatic Organoid Research and Disease Modeling (1) Pluripotent Stem Cells (1) Proteome Dynamics (8) Proteomics (3) Proteomics and Molecular Mechanisms of Neurodegenerative Diseases (1) Quantitative Developmental Biology (3) RNA Biology and Posttranscriptional Regulation (10) Structural Biology of Membrane-Associated Processes (4) Systems Biology Imaging (1) Systems Biology of Gene Regulatory Elements (4) Translational Bioinformatics (2) Translational Cardiology and Functional Genomics (2) Translational Oncology of Solid Tumors (1) Translational Tumorimmunology (2) 14 Results: Active Filter: Janz, Martin Dr.Mathas, Stephan Dr.Ohler, Uwe Prof. Dr.Bioinformatics and Omics Data Science Sort: Result score Newest to oldest Oldest to newest September 19, 2017 / Nat Commun RNA localization is a key determinant of neurite-enriched proteome A. Zappulo D. van den Bruck C. Ciolli Mattioli V. Franke K. Imami E. McShane M. Moreno-Estelles L. Calviello A. Filipchyk E. Peguero-Sanchez T. Müller A. Woehler C. Birchmeier E. Merino N. Rajewsky U. Ohler E.O. Mazzoni M. Selbach A. Akalin M. Chekulaeva June 02, 2017 / Nucleic Acids Res RCAS: an RNA centric annotation system for transcriptome-wide regions of interest B. Uyar D. Yusuf R. Wurmus N. Rajewsky U. Ohler A. Akalin July 03, 2017 / Nucleic Acids Res The RNA workbench: best practices for RNA and high-throughput sequencing bioinformatics in Galaxy B.A. Grüning J. Fallmann D. Yusuf S. Will A. Erxleben F. Eggenhofer T. Houwaart B. Batut P. Videm A. Bagnacani M. Wolfien S.C. Lott Y. Hoogstrate W.R. Hess O. Wolkenhauer S. Hoffmann A. Akalin U. Ohler P.F. Stadler R. Backofen January 25, 2019 / Nucleic Acids Res Deciphering human ribonucleoprotein regulatory networks N. Mukherjee H.H. Wessels S. Lebedeva M. Sajek M. Ghanbari A. Garzia A. Munteanu D. Yusuf T. Farazi J.I. Hoell K.M. Akat A. Akalin T. Tuschl U. Ohler July 01, 2022 / Nat Genet Multiomic atlas with functional stratification and developmental dynamics of zebrafish cis-regulatory elements D. Baranasic M. Hörtenhuber P.J. Balwierz T. Zehnder A.K. Mukarram C. Nepal C. Várnai Y. Hadzhiev A. Jimenez-Gonzalez N. Li J. Wragg F.M. D'Orazio D. Relic M. Pachkov N. Díaz B. Hernández-Rodríguez Z. Chen M. Stoiber M. Dong I. Stevens S.E. Ross A. Eagle R. Martin O. Obasaju S. Rastegar A.C. McGarvey W. Kopp E. Chambers D. Wang H.R. Kim R.D. Acemel S. Naranjo M. Łapiński V. Chong S. Mathavan B. Peers T. Sauka-Spengler M. Vingron P. Carninci U. Ohler S.A. Lacadie S.M. Burgess C. Winata F. van Eeden J.M. Vaquerizas J.L. Gómez-Skarmeta D. Onichtchouk B.J. Brown O. Bogdanovic E. van Nimwegen M. Westerfield F.C Wardle C.O. Daub B. Lenhard F. Müller October 05, 2020 / J Exp Med PDGFA-associated protein 1 protects mature B lymphocytes from stress-induced cell death and promotes antibody gene diversification V. Delgado-Benito M. Berruezo-Llacuna R. Altwasser W. Winkler D. Sundaravinayagam S. Balasubramanian M. Caganova R. Graf A. Rahjouei M.T. Henke M. Driesner L. Keller A. Prigione M. Janz A. Akalin M. Di Virgilio July 13, 2020 / Nat Commun Deep learning for genomics using Janggu W. Kopp R. Monti A. Tamburrini U. Ohler A. Akalin March 28, 2019 / Blood Autocrine LTA signaling drives NF-κB and JAK-STAT activity and myeloid gene expression in Hodgkin lymphoma L. von Hoff E. Kärgel V. Franke E. McShane K.W. Schulz-Beiss G. Patone N. Schleussner M. Kolesnichenko N. Hübner O. Daumke M. Selbach A. Akalin S. Mathas C. Scheidereit February 21, 2019 / Genome Biol Reproducible inference of transcription factor footprints in ATAC-seq and DNase-seq datasets using protocol-specific bias modeling A. Karabacak Calviello A. Hirsekorn R. Wurmus D. Yusuf U. Ohler April 09, 2019 / Nat Commun Global identification of functional microRNA-mRNA interactions in Drosophila H.H. Wessels S. Lebedeva A. Hirsekorn R. Wurmus A. Akalin N. Mukherjee U. Ohler Pagination Current page 1 Page 2 Next page Next › Last page Last »
September 19, 2017 / Nat Commun RNA localization is a key determinant of neurite-enriched proteome A. Zappulo D. van den Bruck C. Ciolli Mattioli V. Franke K. Imami E. McShane M. Moreno-Estelles L. Calviello A. Filipchyk E. Peguero-Sanchez T. Müller A. Woehler C. Birchmeier E. Merino N. Rajewsky U. Ohler E.O. Mazzoni M. Selbach A. Akalin M. Chekulaeva
June 02, 2017 / Nucleic Acids Res RCAS: an RNA centric annotation system for transcriptome-wide regions of interest B. Uyar D. Yusuf R. Wurmus N. Rajewsky U. Ohler A. Akalin
July 03, 2017 / Nucleic Acids Res The RNA workbench: best practices for RNA and high-throughput sequencing bioinformatics in Galaxy B.A. Grüning J. Fallmann D. Yusuf S. Will A. Erxleben F. Eggenhofer T. Houwaart B. Batut P. Videm A. Bagnacani M. Wolfien S.C. Lott Y. Hoogstrate W.R. Hess O. Wolkenhauer S. Hoffmann A. Akalin U. Ohler P.F. Stadler R. Backofen
January 25, 2019 / Nucleic Acids Res Deciphering human ribonucleoprotein regulatory networks N. Mukherjee H.H. Wessels S. Lebedeva M. Sajek M. Ghanbari A. Garzia A. Munteanu D. Yusuf T. Farazi J.I. Hoell K.M. Akat A. Akalin T. Tuschl U. Ohler
July 01, 2022 / Nat Genet Multiomic atlas with functional stratification and developmental dynamics of zebrafish cis-regulatory elements D. Baranasic M. Hörtenhuber P.J. Balwierz T. Zehnder A.K. Mukarram C. Nepal C. Várnai Y. Hadzhiev A. Jimenez-Gonzalez N. Li J. Wragg F.M. D'Orazio D. Relic M. Pachkov N. Díaz B. Hernández-Rodríguez Z. Chen M. Stoiber M. Dong I. Stevens S.E. Ross A. Eagle R. Martin O. Obasaju S. Rastegar A.C. McGarvey W. Kopp E. Chambers D. Wang H.R. Kim R.D. Acemel S. Naranjo M. Łapiński V. Chong S. Mathavan B. Peers T. Sauka-Spengler M. Vingron P. Carninci U. Ohler S.A. Lacadie S.M. Burgess C. Winata F. van Eeden J.M. Vaquerizas J.L. Gómez-Skarmeta D. Onichtchouk B.J. Brown O. Bogdanovic E. van Nimwegen M. Westerfield F.C Wardle C.O. Daub B. Lenhard F. Müller
October 05, 2020 / J Exp Med PDGFA-associated protein 1 protects mature B lymphocytes from stress-induced cell death and promotes antibody gene diversification V. Delgado-Benito M. Berruezo-Llacuna R. Altwasser W. Winkler D. Sundaravinayagam S. Balasubramanian M. Caganova R. Graf A. Rahjouei M.T. Henke M. Driesner L. Keller A. Prigione M. Janz A. Akalin M. Di Virgilio
July 13, 2020 / Nat Commun Deep learning for genomics using Janggu W. Kopp R. Monti A. Tamburrini U. Ohler A. Akalin
March 28, 2019 / Blood Autocrine LTA signaling drives NF-κB and JAK-STAT activity and myeloid gene expression in Hodgkin lymphoma L. von Hoff E. Kärgel V. Franke E. McShane K.W. Schulz-Beiss G. Patone N. Schleussner M. Kolesnichenko N. Hübner O. Daumke M. Selbach A. Akalin S. Mathas C. Scheidereit
February 21, 2019 / Genome Biol Reproducible inference of transcription factor footprints in ATAC-seq and DNase-seq datasets using protocol-specific bias modeling A. Karabacak Calviello A. Hirsekorn R. Wurmus D. Yusuf U. Ohler
April 09, 2019 / Nat Commun Global identification of functional microRNA-mRNA interactions in Drosophila H.H. Wessels S. Lebedeva A. Hirsekorn R. Wurmus A. Akalin N. Mukherjee U. Ohler