Scientific Publications Search Search Author Impact Factor Release Date Research Group Search Sort by RelevanceFrom A-ZAuthored onDate/Time RangeRelease date Order AscDesc Akalin, Altuna Dr. (4) Beule, Dieter Dr. (1) Carvalho, Silvia Filipa (3) Diecke, Sebastian Dr. (1) Gil, Marine (1) Gorski, Stan Dr. (1) Grosswendt, Stefanie Dr. (1) Harabula, Izabela-Cezara (4) Hirsekorn, Antje (1) Hübner, Norbert Prof. Dr. (1) Irastorza Azcarate, Ibai Dr. (5) Junker, Jan Philipp Prof. Dr. (1) Kettenmann, Helmut Prof. Dr. (1) Kocks, Christine Dr. (1) Krabbe, Grietje Dr. (1) Kukalev, Alexander Dr. (8) Lacadie, Scott Allen Dr. (1) Landthaler, Markus Prof. Dr. (1) Lupianez Garcia, Dario Jesus Dr. (1) Markowski, Julia (1) Meijer, Mandy Dr. (1) Merks, Anne Margarete Dr. (1) Ohler, Uwe Prof. Dr. (1) Panakova, Daniela Dr. (1) Pombo, Ana Prof. Dr. (93) Rajewsky, Nikolaus Prof. Dr. (2) Robson, Michael Dr. (1) Sander, Maike Prof. Dr. (1) Schwarz, Roland Dr. (1) Selbach, Matthias Prof. Dr. (1) Serebreni, Leonid Dr. (1) Stachel-Braum, Philipp Noah Tim (1) Szabo, Dominik (3) Thieme, Christoph Dr. (4) Vidal, Marie Dr. (1) Vucicevic, Dubravka (1) Willemin, Andréa (1) Winick-Ng, Warren Dr. (3) Wolf, Susanne Dr. (1) Wyler, Emanuel Dr. (1) Zea Redondo, Luna (4) (-) Franke, Vedran Dr. (2) 2016 (1) 2017 (1) 2020 (1) 2021 (3) 2022 (2) 2023 (1) Advanced Light Microscopy (3) AG Müller/Dechend (ECRC) (40) Anchored Signalling (5) Angiogenesis & Metabolism Laboratory (1) Animal Phenotyping (10) Bioinformatics and Omics Data Science (25) Biology of Malignant Lymphomas (3) Cancer Genetics and Cellular Stress Responses (3) Cardiac MRI (2) Cellular Neurosciences (2) Clinical Research Unit (2) Computational Regulatory Genomics (3) Developmental Biology / Signal Transduction (3) Developmental Neurobiology (2) (-) Epigenetic Regulation and Chromatin Architecture (9) Experimental Ultrahigh-Field MR (4) Genetics and Genomics of Cardiovascular Diseases (30) Genetics of Congenital Heart Disease (1) Genomics (2) Host-microbiome factors in cardiovascular disease (4) Hypertension-caused End-Organ Damage (40) Hypertension-Mediated End-Organ Damage (40) Immune Regulation and Cancer (1) Integrative Vascular Biology (7) Intracellular Proteolysis (5) Magnetic Resonance (4) Mathematical Cell Physiology (1) Mathematical Modelling of Cellular Processes (3) Microenvironmental Regulation in Autoimmunity and Cancer (1) Mobile DNA (4) Molecular Biology of Peptide Hormones (13) Molecular Cardiovascular Research (2) Molecular Genetics of Chronic Inflammation and Allergic Disease (1) Molecular Pathways in Cortical Development (1) Molecular Physiology of Somatic Sensation (1) Myology (4) Nephrology and Inflammatory Vascular Diseases (2) Neural Circuits and Behaviour (4) Neuroimmunology Laboratory (1) Non-coding RNAs and Mechanisms of Cytoplasmic Gene Regulation (6) Organoids (1) Out-patient Clinic for Neuroimmunology (1) Pluripotent Stem Cells (2) Protein Production and Characterization (2) Proteome Dynamics (14) Proteomics (18) Proteomics and Metabolomics (2) Proteomics and Molecular Mechanisms of Neurodegenerative Diseases (5) Psychoneuroimmunology (1) Quantitative Developmental Biology (1) RNA Biology and Posttranscriptional Regulation (9) Structural Biology of Membrane-Associated Processes (5) Synaptic Transmission and Plasticity (1) Systems Biology Imaging (3) Systems Biology of Gene Regulatory Elements (9) Translational Bioinformatics (3) Translational Cardiology and Functional Genomics (3) Translational Oncology of Solid Tumors (6) Translational Tumorimmunology (2) Tumor heterogeneity and treatment resistance in pediatric cancer (1) 9 Results: Active Filter: Franke, Vedran Dr.Epigenetic Regulation and Chromatin Architecture Sort: Result score Newest to oldest Oldest to newest October 20, 2022 / bioRxiv 3D genome topologies distinguish pluripotent epiblast and primitive endoderm cells in the mouse blastocyst G. Loof D. Szabo V. Garg A. Kukalev L. Zea-Redondo R. Kempfer T.M. Sparks Yi. Zhang C.J. Thieme S. Carvalho A. Weise M. Balachandran T. Liehr L.R. Welch A.K. Hadjantonakis A. Pombo November 25, 2021 / Nature Cell-type specialization is encoded by specific chromatin topologies W. Winick-Ng A. Kukalev I. Harabula L. Zea-Redondo D. Szabó M. Meijer L. Serebreni Y. Zhang S. Bianco A.M. Chiariello I. Irastorza-Azcarate C.J. Thieme T.M. Sparks S. Carvalho L. Fiorillo F. Musella E. Irani E.T. Triglia A.A. Kolodziejczyk A. Abentung G. Apostolova E.J. Paul V. Franke R. Kempfer A. Akalin S.A. Teichmann G. Dechant M.A. Ungless M. Nicodemi L. Welch G. Castelo-Branco A. Pombo May, 2021 / Nat Methods Comparison of the Hi-C, GAM and SPRITE methods using polymer models of chromatin L. Fiorillo F. Musella M. Conte R. Kempfer A.M. Chiariello S. Bianco A. Kukalev I. Irastorza-Azcarate A. Esposito A. Abraham A. Prisco A. Pombo M. Nicodemi October 01, 2021 / Bioinformatics GAMIBHEAR: whole-genome haplotype reconstruction from Genome Architecture Mapping data J. Markowski R. Kempfer A. Kukalev I. Irastorza-Azcarate G. Loof B. Kehr A. Pombo S. Rahmann R.F. Schwarz April, 2020 / Nat Rev Genet Methods for mapping 3D chromosome architecture R. Kempfer A. Pombo October 13, 2016 / Nature Formation of new chromatin domains determines pathogenicity of genomic duplications M. Franke D.M. Ibrahim G. Andrey W. Schwarzer V. Heinrich R. Schoepflin K. Kraft R. Kempfer I. Jerkovic W.L. Chan M. Spielmann B. Timmermann L. Wittler I. Kurth P. Cambiaso O. Zuffardi G. Houge L. Lambie F. Brancati A. Pombo M. Vingron F. Spitz S. Mundlos October 31, 2017 / Genome Biol Widespread activation of antisense transcription of the host genome during herpes simplex virus 1 infection E. Wyler J. Menegatti V. Franke C. Kocks A. Boltengagen T. Hennig K. Theil A. Rutkowski C. Ferrai L. Baer L. Kermas C. Friedel N. Rajewsky A. Akalin L. Dölken F. Grässer M. Landthaler January 13, 2022 / Cell Genom Single-cell-resolved dynamics of chromatin architecture delineate cell and regulatory states in zebrafish embryos A.C. McGarvey W. Kopp D. Vučićević K. Mattonet R. Kempfer A. Hirsekorn I. Bilić M. Gil A. Trinks A.M. Merks D. Panáková A. Pombo A. Akalin J.P. Junker D.Y.R. Stainier D. Garfield U. Ohler S.A. Lacadie July, 2023 / Nat Methods Multiplex-GAM: genome-wide identification of chromatin contacts yields insights overlooked by Hi-C R.A. Beagrie C.J. Thieme C. Annunziatella C. Baugher Y. Zhang M. Schueler A. Kukalev R. Kempfer A.M. Chiariello S. Bianco Y. Li T. Davis A. Scialdone L.R. Welch M. Nicodemi A. Pombo
October 20, 2022 / bioRxiv 3D genome topologies distinguish pluripotent epiblast and primitive endoderm cells in the mouse blastocyst G. Loof D. Szabo V. Garg A. Kukalev L. Zea-Redondo R. Kempfer T.M. Sparks Yi. Zhang C.J. Thieme S. Carvalho A. Weise M. Balachandran T. Liehr L.R. Welch A.K. Hadjantonakis A. Pombo
November 25, 2021 / Nature Cell-type specialization is encoded by specific chromatin topologies W. Winick-Ng A. Kukalev I. Harabula L. Zea-Redondo D. Szabó M. Meijer L. Serebreni Y. Zhang S. Bianco A.M. Chiariello I. Irastorza-Azcarate C.J. Thieme T.M. Sparks S. Carvalho L. Fiorillo F. Musella E. Irani E.T. Triglia A.A. Kolodziejczyk A. Abentung G. Apostolova E.J. Paul V. Franke R. Kempfer A. Akalin S.A. Teichmann G. Dechant M.A. Ungless M. Nicodemi L. Welch G. Castelo-Branco A. Pombo
May, 2021 / Nat Methods Comparison of the Hi-C, GAM and SPRITE methods using polymer models of chromatin L. Fiorillo F. Musella M. Conte R. Kempfer A.M. Chiariello S. Bianco A. Kukalev I. Irastorza-Azcarate A. Esposito A. Abraham A. Prisco A. Pombo M. Nicodemi
October 01, 2021 / Bioinformatics GAMIBHEAR: whole-genome haplotype reconstruction from Genome Architecture Mapping data J. Markowski R. Kempfer A. Kukalev I. Irastorza-Azcarate G. Loof B. Kehr A. Pombo S. Rahmann R.F. Schwarz
October 13, 2016 / Nature Formation of new chromatin domains determines pathogenicity of genomic duplications M. Franke D.M. Ibrahim G. Andrey W. Schwarzer V. Heinrich R. Schoepflin K. Kraft R. Kempfer I. Jerkovic W.L. Chan M. Spielmann B. Timmermann L. Wittler I. Kurth P. Cambiaso O. Zuffardi G. Houge L. Lambie F. Brancati A. Pombo M. Vingron F. Spitz S. Mundlos
October 31, 2017 / Genome Biol Widespread activation of antisense transcription of the host genome during herpes simplex virus 1 infection E. Wyler J. Menegatti V. Franke C. Kocks A. Boltengagen T. Hennig K. Theil A. Rutkowski C. Ferrai L. Baer L. Kermas C. Friedel N. Rajewsky A. Akalin L. Dölken F. Grässer M. Landthaler
January 13, 2022 / Cell Genom Single-cell-resolved dynamics of chromatin architecture delineate cell and regulatory states in zebrafish embryos A.C. McGarvey W. Kopp D. Vučićević K. Mattonet R. Kempfer A. Hirsekorn I. Bilić M. Gil A. Trinks A.M. Merks D. Panáková A. Pombo A. Akalin J.P. Junker D.Y.R. Stainier D. Garfield U. Ohler S.A. Lacadie
July, 2023 / Nat Methods Multiplex-GAM: genome-wide identification of chromatin contacts yields insights overlooked by Hi-C R.A. Beagrie C.J. Thieme C. Annunziatella C. Baugher Y. Zhang M. Schueler A. Kukalev R. Kempfer A.M. Chiariello S. Bianco Y. Li T. Davis A. Scialdone L.R. Welch M. Nicodemi A. Pombo