Scientific Publications Search Search Author Release Date Research Group Search Sort by RelevanceFrom A-ZAuthored onDate/Time RangeRelease date Order AscDesc Akalin, Altuna Dr. (73) Altmueller, Janine Dr.med. (1) Annibale, Paolo Dr. (1) Bahry, Ella Dr. (1) Barke, Niclas (1) Berruezo Llacuna, Maria (1) Birchmeier-Kohler, Carmen Prof. Dr. (3) Blume, Alexander Dr. (6) Borodina, Tatiana Dr. (1) Carvalho, Silvia Filipa (1) Chekulaeva, Marina Dr. (2) Chen, Wei Prof. Dr. (1) Chu, Van Trung Dr. (1) Costanza, Mariantonia Dr. (2) Daumke, Oliver Prof. Dr. (4) Del Giudice, Simone (1) Deter, Aylina (1) Diecke, Sebastian Dr. (2) Di Virgilio, Michela Prof. Dr. (2) Driesner, Madlen (1) Escobar Fernandez, Helena Dr. (1) Faxel, Miriam (1) Freimuth, Jonas (1) Gerhardt, Holger Prof. Dr. (1) Ghanbari, Mahsa Dr. (1) Gil, Marine (1) Graf, Robin Dr. (1) Harabula, Izabela-Cezara (1) Haucke, Volker Professor (1) Herzog, Margareta (1) Hinz, Michael Dr. (2) Hirsekorn, Antje (4) Höpken, Uta Elisabeth PD Dr. (2) Hübner, Norbert Prof. Dr. (1) Irastorza Azcarate, Ibai Dr. (1) Janz, Martin Dr. (3) Junker, Jan Philipp Prof. Dr. (1) Keller, Lisa (1) Kempa, Stefan Dr. (1) Kirchner, Marieluise Dr. (1) Kocks, Christine Dr. (2) Kühn, Ralf Dr. (1) Kukalev, Alexander Dr. (2) Lacadie, Scott Allen Dr. (3) Landthaler, Markus Prof. Dr. (5) Lohse, Martin Prof. Dr. (1) Lusatis, Simone (1) Marg, Andreas Dr. (1) Mathas, Stephan Dr. (3) Meijer, Mandy Dr. (1) Merks, Anne Margarete Dr. (1) Mertins, Philipp Dr. (1) Monti, Remo (1) Müller, Thomas Dr. (1) Müthel, Stefanie (3) Ofenbauer, Andreas Dr. (1) Ohler, Uwe Prof. Dr. (10) Panakova, Daniela Dr. (1) Patarcic, Inga Dr. (1) Patone, Giannino Dr. (1) Pombo, Ana Prof. Dr. (3) Popp, Oliver Dr. (1) Preibisch, Stephan Dr. (1) Prigione, Alessandro Prof. Dr. (1) Quedenau, Claudia (1) Rajewsky, Klaus Prof. Dr. (2) Rajewsky, Nikolaus Prof. Dr. (8) Rathgeber, Anja (1) Rehm, Armin Dr. (1) Roske, Yvette Dr. (1) Rrustemi, Trendelina (1) Rudolph, Ina-Maria Dr. (1) Scheidereit, Claus Prof. Dr. (4) Schmidt-Ullrich, Ruth Dr. (1) Schmitt, Clemens Prof. Dr. (1) Selbach, Matthias Prof. Dr. (5) Serebreni, Leonid Dr. (1) Siffrin, Volker (1) Spuler, Simone Prof. (2) Szabo, Dominik (1) Thieme, Christoph Dr. (1) Tursun, Baris Dr. (4) Uyar, Bora Dr. (15) Vucicevic, Dubravka (2) Willimsky, Gerald Dr. (1) Willnow, Thomas Prof. Dr. (1) Winick-Ng, Warren Dr. (1) Woehler, Andrew Dr. (3) Wurmus, Ricardo (9) Wyler, Emanuel Dr. (4) Zampieri, Niccolo Dr. (1) Zauber, Henrik Dr. (1) Zea Redondo, Luna (1) (-) Franke, Vedran Dr. (22) 2015 (1) 2017 (2) 2018 (1) 2019 (4) 2020 (1) 2021 (5) 2022 (4) 2023 (4) AG Müller/Dechend (ECRC) (1) (-) Bioinformatics and Omics Data Science (22) Biology of Malignant Lymphomas (3) Clinic of Psychiatry / Modul Psychiatry of Aging (1) Computational Regulatory Genomics (1) Developmental Biology / Signal Transduction (4) Epigenetic Regulation and Chromatin Architecture (2) Experimental Ultrahigh-Field MR (33) Genetics and Genomics of Cardiovascular Diseases (5) Genomics (1) Hypertension-caused End-Organ Damage (1) Hypertension-Mediated End-Organ Damage (1) Immune Regulation and Cancer (1) Innate Immunity & Neuroinflammation (18) Magnetic Resonance (33) Mathematical Modelling of Cellular Processes (1) Microenvironmental Regulation in Autoimmunity and Cancer (2) Mobile DNA (171) Molecular Biology of Peptide Hormones (3) Molecular Immunology and Gene Therapy (1) Molecular Physiology of Somatic Sensation (1) Myology (3) Neuroimmunology Laboratory (2) Non-coding RNAs and Mechanisms of Cytoplasmic Gene Regulation (4) Out-patient Clinic for Neuroimmunology (16) Pluripotent Stem Cells (1) Protein Production and Characterization (1) Proteome Dynamics (7) Proteomics (2) Proteomics and Molecular Mechanisms of Neurodegenerative Diseases (4) RNA Biology and Posttranscriptional Regulation (4) Structural Biology of Membrane-Associated Processes (3) Synaptic Transmission and Plasticity (1) Systems Biology Imaging (2) Systems Biology of Gene Regulatory Elements (5) Translational Bioinformatics (1) Translational Oncology of Solid Tumors (2) Translational Tumorimmunology (2) 22 Results: Active Filter: Franke, Vedran Dr.Bioinformatics and Omics Data Science Sort: Result score Newest to oldest Oldest to newest April 01, 2015 / Bioinformatics genomation: a toolkit to summarize, annotate and visualize genomic intervals A. Akalin V. Franke K. Vlahoviček C.E. Mason D. Schübeler April 26, 2022 / Front Immunol Rapid inflammasome activation is attenuated in post-myocardial infarction monocytes H. Giral V. Franke M. Moobed M.F. Müller L. Lübking D.M. James J. Hartung K. Kuschnerus D. Meteva C. Seppelt P. Jakob R. Klingenberg N. Kränkel D. Leistner T. Zeller S. Blankenberg F. Zimmermann A. Haghikia T.F. Lüscher A. Akalin U. Landmesser A. Kratzer May 30, 2022 / Genome Biol Identifying tumor cells at the single-cell level using machine learning J. Dohmen A. Baranovskii J. Ronen B. Uyar V. Franke A. Akalin March 19, 2021 / iScience Transcriptomic profiling of SARS-CoV-2 infected human cell lines identifies HSP90 as target for COVID-19 therapy E. Wyler K. Mösbauer V. Franke A. Diag L.T. Gottula R. Arsiè F. Klironomos D. Koppstein K. Hönzke S. Ayoub C. Buccitelli K. Hoffmann A. Richter I. Legnini A. Ivanov T. Mari S. Del Giudice J. Papies S. Praktiknjo T.F. Meyer M.A. Müller D. Niemeyer A. Hocke M. Selbach A. Akalin N. Rajewsky C. Drosten M. Landthaler December 06, 2021 / Genome Biol The SEQC2 epigenomics quality control (EpiQC) study J. Foox J. Nordlund C. Lalancette T. Gong M. Lacey S. Lent B.W. Langhorst V.K.C. Ponnaluri L. Williams K.R. Padmanabhan R. Cavalcante A. Lundmark D. Butler C. Mozsary J. Gurvitch J.M. Greally M. Suzuki M. Menor M. Nasu A. Alonso C. Sheridan A. Scherer S. Bruinsma G. Golda A. Muszynska P.P. Łabaj M.A. Campbell F. Wos A. Raine U. Liljedahl T. Axelsson C. Wang Z. Chen Z. Yang J. Li X. Yang H. Wang A. Melnick S. Guo A. Blume V. Franke I. Ibanez de Caceres C. Rodriguez-Antolin R. Rosas J.W. Davis J. Ishii D.B. Megherbi W. Xiao W. Liao J. Xu H. Hong B. Ning W. Tong A. Akalin Y. Wang Y. Deng C.E. Mason December 11, 2020 / Nat Commun Single-nucleus transcriptomics reveals functional compartmentalization in syncytial skeletal muscle cells M. Kim V. Franke B. Brandt E.D. Lowenstein V. Schöwel S. Spuler A. Akalin C. Birchmeier October 19, 2021 / Nat Commun PHF3 regulates neuronal gene expression through the Pol II CTD reader domain SPOC L.M. Appel V. Franke M. Bruno I. Grishkovskaya A. Kasiliauskaite T. Kaufmann U.E. Schoeberl M.G. Puchinger S. Kostrhon C. Ebenwaldner M. Sebesta E. Beltzung K. Mechtler G. Lin A. Vlasova M. Leeb R. Pavri A. Stark A. Akalin R. Stefl C. Bernecky K. Djinovic-Carugo D. Slade October 26, 2021 / Cell Rep Lymphocyte access to lymphoma is impaired by high endothelial venule regression L. Menzel M. Zschummel T. Crowley V. Franke M. Grau C. Ulbricht A. Hauser V. Siffrin M. Bajénoff S.E. Acton A. Akalin G. Lenz G. Willimsky U.E. Höpken A. Rehm November 25, 2021 / Nature Cell-type specialization is encoded by specific chromatin topologies W. Winick-Ng A. Kukalev I. Harabula L. Zea-Redondo D. Szabó M. Meijer L. Serebreni Y. Zhang S. Bianco A.M. Chiariello I. Irastorza-Azcarate C.J. Thieme T.M. Sparks S. Carvalho L. Fiorillo F. Musella E. Irani E.T. Triglia A.A. Kolodziejczyk A. Abentung G. Apostolova E.J. Paul V. Franke R. Kempfer A. Akalin S.A. Teichmann G. Dechant M.A. Ungless M. Nicodemi L. Welch G. Castelo-Branco A. Pombo November 07, 2023 / Nat Commun Transcriptional reprogramming by mutated IRF4 in lymphoma N. Schleussner P. Cauchy V. Franke M. Giefing O. Fornes N. Vankadari S.A. Assi M. Costanza M.A. Weniger A. Akalin I. Anagnostopoulos T. Bukur M.G. Casarotto F. Damm O. Daumke B. Edginton-White J.C.M. Gebhardt M. Grau S. Grunwald M.L. Hansmann S. Hartmann L. Huber E. Kärgel S. Lusatis D. Noerenberg N. Obier U. Pannicke A. Fischer A. Reisser A. Rosenwald K. Schwarz S. Sundararaj A. Weilemann W. Winkler W. Xu G. Lenz K. Rajewsky W.W. Wasserman P.N. Cockerill C. Scheidereit R. Siebert R. Küppers R. Grosschedl M. Janz C. Bonifer S. Mathas Pagination Current page 1 Page 2 Page 3 Next page Next › Last page Last »
April 01, 2015 / Bioinformatics genomation: a toolkit to summarize, annotate and visualize genomic intervals A. Akalin V. Franke K. Vlahoviček C.E. Mason D. Schübeler
April 26, 2022 / Front Immunol Rapid inflammasome activation is attenuated in post-myocardial infarction monocytes H. Giral V. Franke M. Moobed M.F. Müller L. Lübking D.M. James J. Hartung K. Kuschnerus D. Meteva C. Seppelt P. Jakob R. Klingenberg N. Kränkel D. Leistner T. Zeller S. Blankenberg F. Zimmermann A. Haghikia T.F. Lüscher A. Akalin U. Landmesser A. Kratzer
May 30, 2022 / Genome Biol Identifying tumor cells at the single-cell level using machine learning J. Dohmen A. Baranovskii J. Ronen B. Uyar V. Franke A. Akalin
March 19, 2021 / iScience Transcriptomic profiling of SARS-CoV-2 infected human cell lines identifies HSP90 as target for COVID-19 therapy E. Wyler K. Mösbauer V. Franke A. Diag L.T. Gottula R. Arsiè F. Klironomos D. Koppstein K. Hönzke S. Ayoub C. Buccitelli K. Hoffmann A. Richter I. Legnini A. Ivanov T. Mari S. Del Giudice J. Papies S. Praktiknjo T.F. Meyer M.A. Müller D. Niemeyer A. Hocke M. Selbach A. Akalin N. Rajewsky C. Drosten M. Landthaler
December 06, 2021 / Genome Biol The SEQC2 epigenomics quality control (EpiQC) study J. Foox J. Nordlund C. Lalancette T. Gong M. Lacey S. Lent B.W. Langhorst V.K.C. Ponnaluri L. Williams K.R. Padmanabhan R. Cavalcante A. Lundmark D. Butler C. Mozsary J. Gurvitch J.M. Greally M. Suzuki M. Menor M. Nasu A. Alonso C. Sheridan A. Scherer S. Bruinsma G. Golda A. Muszynska P.P. Łabaj M.A. Campbell F. Wos A. Raine U. Liljedahl T. Axelsson C. Wang Z. Chen Z. Yang J. Li X. Yang H. Wang A. Melnick S. Guo A. Blume V. Franke I. Ibanez de Caceres C. Rodriguez-Antolin R. Rosas J.W. Davis J. Ishii D.B. Megherbi W. Xiao W. Liao J. Xu H. Hong B. Ning W. Tong A. Akalin Y. Wang Y. Deng C.E. Mason
December 11, 2020 / Nat Commun Single-nucleus transcriptomics reveals functional compartmentalization in syncytial skeletal muscle cells M. Kim V. Franke B. Brandt E.D. Lowenstein V. Schöwel S. Spuler A. Akalin C. Birchmeier
October 19, 2021 / Nat Commun PHF3 regulates neuronal gene expression through the Pol II CTD reader domain SPOC L.M. Appel V. Franke M. Bruno I. Grishkovskaya A. Kasiliauskaite T. Kaufmann U.E. Schoeberl M.G. Puchinger S. Kostrhon C. Ebenwaldner M. Sebesta E. Beltzung K. Mechtler G. Lin A. Vlasova M. Leeb R. Pavri A. Stark A. Akalin R. Stefl C. Bernecky K. Djinovic-Carugo D. Slade
October 26, 2021 / Cell Rep Lymphocyte access to lymphoma is impaired by high endothelial venule regression L. Menzel M. Zschummel T. Crowley V. Franke M. Grau C. Ulbricht A. Hauser V. Siffrin M. Bajénoff S.E. Acton A. Akalin G. Lenz G. Willimsky U.E. Höpken A. Rehm
November 25, 2021 / Nature Cell-type specialization is encoded by specific chromatin topologies W. Winick-Ng A. Kukalev I. Harabula L. Zea-Redondo D. Szabó M. Meijer L. Serebreni Y. Zhang S. Bianco A.M. Chiariello I. Irastorza-Azcarate C.J. Thieme T.M. Sparks S. Carvalho L. Fiorillo F. Musella E. Irani E.T. Triglia A.A. Kolodziejczyk A. Abentung G. Apostolova E.J. Paul V. Franke R. Kempfer A. Akalin S.A. Teichmann G. Dechant M.A. Ungless M. Nicodemi L. Welch G. Castelo-Branco A. Pombo
November 07, 2023 / Nat Commun Transcriptional reprogramming by mutated IRF4 in lymphoma N. Schleussner P. Cauchy V. Franke M. Giefing O. Fornes N. Vankadari S.A. Assi M. Costanza M.A. Weniger A. Akalin I. Anagnostopoulos T. Bukur M.G. Casarotto F. Damm O. Daumke B. Edginton-White J.C.M. Gebhardt M. Grau S. Grunwald M.L. Hansmann S. Hartmann L. Huber E. Kärgel S. Lusatis D. Noerenberg N. Obier U. Pannicke A. Fischer A. Reisser A. Rosenwald K. Schwarz S. Sundararaj A. Weilemann W. Winkler W. Xu G. Lenz K. Rajewsky W.W. Wasserman P.N. Cockerill C. Scheidereit R. Siebert R. Küppers R. Grosschedl M. Janz C. Bonifer S. Mathas