Scientific Publications Search Search Author Impact Factor Release Date Research Group Search Sort by RelevanceFrom A-ZAuthored onDate/Time RangeRelease date Order AscDesc Akalin, Altuna Dr. (4) Beule, Dieter Dr. (1) Carvalho, Silvia Filipa (3) Diecke, Sebastian Dr. (1) Franke, Vedran Dr. (2) Gil, Marine (1) Gorski, Stan Dr. (1) Grosswendt, Stefanie Dr. (1) Harabula, Izabela-Cezara (4) Hirsekorn, Antje (1) Hübner, Norbert Prof. Dr. (1) Irastorza Azcarate, Ibai Dr. (5) Junker, Jan Philipp Prof. Dr. (1) Kettenmann, Helmut Prof. Dr. (1) Kocks, Christine Dr. (1) Krabbe, Grietje Dr. (1) Lacadie, Scott Allen Dr. (1) Landthaler, Markus Prof. Dr. (1) Lupianez Garcia, Dario Jesus Dr. (1) Markowski, Julia (1) Meijer, Mandy Dr. (1) Merks, Anne Margarete Dr. (1) Ohler, Uwe Prof. Dr. (1) Panakova, Daniela Dr. (1) Pombo, Ana Prof. Dr. (93) Robson, Michael Dr. (1) Sander, Maike Prof. Dr. (1) Schwarz, Roland Dr. (1) Selbach, Matthias Prof. Dr. (1) Serebreni, Leonid Dr. (1) Stachel-Braum, Philipp Noah Tim (1) Szabo, Dominik (3) Thieme, Christoph Dr. (4) Vidal, Marie Dr. (1) Vucicevic, Dubravka (1) Willemin, Andréa (1) Winick-Ng, Warren Dr. (3) Wolf, Susanne Dr. (1) Wyler, Emanuel Dr. (1) Zea Redondo, Luna (4) (-) Kukalev, Alexander Dr. (8) (-) Rajewsky, Nikolaus Prof. Dr. (2) 2015 (1) 2017 (2) 2020 (1) 2021 (3) 2022 (1) 2023 (1) 2024 (1) AG Müller/Dechend (ECRC) (1) Bioinformatics and Omics Data Science (11) Computational methodologies and omic analytics (1) Computational Regulatory Genomics (5) Developmental Biology / Signal Transduction (8) Developmental Neurobiology (1) Development and Function of Neural Circuits (1) Electron Microscopy (1) (-) Epigenetic Regulation and Chromatin Architecture (10) Flow Cytometry (1) From Cell States to Function (5) Gastrointestinal Barrier, Regeneration and Carcinogenesis (1) Genetics and Genomics of Cardiovascular Diseases (5) Genome Diversification & Integrity (1) Genome Engineering & Disease Models (4) Genomics (4) Hypertension-caused End-Organ Damage (1) Hypertension-Mediated End-Organ Damage (1) Image Data Analysis (1) Immune Regulation and Cancer (1) Integrative Vascular Biology (1) Mathematical Cell Physiology (2) Microenvironmental Regulation in Autoimmunity and Cancer (1) Molecular Cardiovascular Research (2) Molecular Pathways in Cortical Development (1) Molecular Physiology of Somatic Sensation (3) Myology (1) Non-coding RNAs and Mechanisms of Cytoplasmic Gene Regulation (3) Organoids (11) Pluripotent Stem Cells (4) Protein Production and Characterization (1) Proteome Dynamics (9) Proteomics (2) Proteomics and Metabolomics (8) Proteomics and Molecular Mechanisms of Neurodegenerative Diseases (7) Psychoneuroimmunology (1) Quantitative Developmental Biology (2) Quantitative Stem Cell Biology (2) RNA Biology and Posttranscriptional Regulation (20) Structural Biology of Membrane-Associated Processes (2) Systems Biology Imaging (8) Systems Biology of Gene Regulatory Elements (168) Transgenics (4) Translational Bioinformatics (5) Translational Cardiology and Functional Genomics (2) Translational Oncology of Solid Tumors (2) 10 Results: Active Filter: Kukalev, Alexander Dr.Rajewsky, Nikolaus Prof. Dr.Epigenetic Regulation and Chromatin Architecture Sort: Result score Newest to oldest Oldest to newest November 19, 2020 / Nature LifeTime and improving European healthcare through cell-based interceptive medicine N. Rajewsky G. Almouzni S.A. Gorski S. Aerts I. Amit M.G. Bertero C. Bock A.L. Bredenoord G. Cavalli S. Chiocca H. Clevers B. De Strooper A. Eggert J. Ellenberg X.M. Fernández M. Figlerowicz S.M. Gasser N. Hubner J. Kjems J.A. Knoblich G. Krabbe P. Lichter S. Linnarsson J.C. Marine J. Marioni M.A. Marti-Renom M.G. Netea D. Nickel M. Nollmann H.R. Novak H. Parkinson S. Piccolo I. Pinheiro A. Pombo C. Popp W. Reik S. Roman-Roman P. Rosenstiel J.L. Schultze O. Stegle A. Tanay G. Testa D. Thanos F.J. Theis M.E. Torres-Padilla A. Valencia C. Vallot A. van Oudenaarden M. Vidal T. Voet November 25, 2021 / Nature Cell-type specialization is encoded by specific chromatin topologies W. Winick-Ng A. Kukalev I. Harabula L. Zea-Redondo D. Szabó M. Meijer L. Serebreni Y. Zhang S. Bianco A.M. Chiariello I. Irastorza-Azcarate C.J. Thieme T.M. Sparks S. Carvalho L. Fiorillo F. Musella E. Irani E.T. Triglia A.A. Kolodziejczyk A. Abentung G. Apostolova E.J. Paul V. Franke R. Kempfer A. Akalin S.A. Teichmann G. Dechant M.A. Ungless M. Nicodemi L. Welch G. Castelo-Branco A. Pombo October 01, 2021 / Bioinformatics GAMIBHEAR: whole-genome haplotype reconstruction from Genome Architecture Mapping data J. Markowski R. Kempfer A. Kukalev I. Irastorza-Azcarate G. Loof B. Kehr A. Pombo S. Rahmann R.F. Schwarz July, 2023 / Nat Methods Multiplex-GAM: genome-wide identification of chromatin contacts yields insights overlooked by Hi-C R.A. Beagrie C.J. Thieme C. Annunziatella C. Baugher Y. Zhang M. Schueler A. Kukalev R. Kempfer A.M. Chiariello S. Bianco Y. Li T. Davis A. Scialdone L.R. Welch M. Nicodemi A. Pombo May, 2021 / Nat Methods Comparison of the Hi-C, GAM and SPRITE methods using polymer models of chromatin L. Fiorillo F. Musella M. Conte R. Kempfer A.M. Chiariello S. Bianco A. Kukalev I. Irastorza-Azcarate A. Esposito A. Abraham A. Prisco A. Pombo M. Nicodemi April, 2024 / Biol Open SRRM2 splicing factor modulates cell fate in early development S. Carvalho L. Zea-Redondo T.C.C. Tang P. Stachel-Braum D. Miller P. Caldas A. Kukalev S. Diecke S. Grosswendt A.R. Grosso A. Pombo October 20, 2022 / bioRxiv 3D genome topologies distinguish pluripotent epiblast and primitive endoderm cells in the mouse blastocyst G. Loof D. Szabo V. Garg A. Kukalev L. Zea-Redondo R. Kempfer T.M. Sparks Yi. Zhang C.J. Thieme S. Carvalho A. Weise M. Balachandran T. Liehr L.R. Welch A.K. Hadjantonakis A. Pombo December 19, 2015 / eLife Methylation of RNA polymerase II non-consensus Lysine residues marks early transcription in mammalian cells J.D. Dias T. Rito E. Torlai Triglia A. Kukalev C. Ferrai M. Chotalia E. Brookes H. Kimura A. Pombo October 16, 2017 / Mol Syst Biol RNA polymerase II primes Polycomb-repressed developmental genes throughout terminal neuronal differentiation C. Ferrai E. Torlai Triglia J.R. Risner-Janiczek T. Rito O.J.L. Rackham I. De Santiago A. Kukalev M. Nicodemi A. Akalin M. Li M.A. Ungless A. Pombo October 31, 2017 / Genome Biol Widespread activation of antisense transcription of the host genome during herpes simplex virus 1 infection E. Wyler J. Menegatti V. Franke C. Kocks A. Boltengagen T. Hennig K. Theil A. Rutkowski C. Ferrai L. Baer L. Kermas C. Friedel N. Rajewsky A. Akalin L. Dölken F. Grässer M. Landthaler
November 19, 2020 / Nature LifeTime and improving European healthcare through cell-based interceptive medicine N. Rajewsky G. Almouzni S.A. Gorski S. Aerts I. Amit M.G. Bertero C. Bock A.L. Bredenoord G. Cavalli S. Chiocca H. Clevers B. De Strooper A. Eggert J. Ellenberg X.M. Fernández M. Figlerowicz S.M. Gasser N. Hubner J. Kjems J.A. Knoblich G. Krabbe P. Lichter S. Linnarsson J.C. Marine J. Marioni M.A. Marti-Renom M.G. Netea D. Nickel M. Nollmann H.R. Novak H. Parkinson S. Piccolo I. Pinheiro A. Pombo C. Popp W. Reik S. Roman-Roman P. Rosenstiel J.L. Schultze O. Stegle A. Tanay G. Testa D. Thanos F.J. Theis M.E. Torres-Padilla A. Valencia C. Vallot A. van Oudenaarden M. Vidal T. Voet
November 25, 2021 / Nature Cell-type specialization is encoded by specific chromatin topologies W. Winick-Ng A. Kukalev I. Harabula L. Zea-Redondo D. Szabó M. Meijer L. Serebreni Y. Zhang S. Bianco A.M. Chiariello I. Irastorza-Azcarate C.J. Thieme T.M. Sparks S. Carvalho L. Fiorillo F. Musella E. Irani E.T. Triglia A.A. Kolodziejczyk A. Abentung G. Apostolova E.J. Paul V. Franke R. Kempfer A. Akalin S.A. Teichmann G. Dechant M.A. Ungless M. Nicodemi L. Welch G. Castelo-Branco A. Pombo
October 01, 2021 / Bioinformatics GAMIBHEAR: whole-genome haplotype reconstruction from Genome Architecture Mapping data J. Markowski R. Kempfer A. Kukalev I. Irastorza-Azcarate G. Loof B. Kehr A. Pombo S. Rahmann R.F. Schwarz
July, 2023 / Nat Methods Multiplex-GAM: genome-wide identification of chromatin contacts yields insights overlooked by Hi-C R.A. Beagrie C.J. Thieme C. Annunziatella C. Baugher Y. Zhang M. Schueler A. Kukalev R. Kempfer A.M. Chiariello S. Bianco Y. Li T. Davis A. Scialdone L.R. Welch M. Nicodemi A. Pombo
May, 2021 / Nat Methods Comparison of the Hi-C, GAM and SPRITE methods using polymer models of chromatin L. Fiorillo F. Musella M. Conte R. Kempfer A.M. Chiariello S. Bianco A. Kukalev I. Irastorza-Azcarate A. Esposito A. Abraham A. Prisco A. Pombo M. Nicodemi
April, 2024 / Biol Open SRRM2 splicing factor modulates cell fate in early development S. Carvalho L. Zea-Redondo T.C.C. Tang P. Stachel-Braum D. Miller P. Caldas A. Kukalev S. Diecke S. Grosswendt A.R. Grosso A. Pombo
October 20, 2022 / bioRxiv 3D genome topologies distinguish pluripotent epiblast and primitive endoderm cells in the mouse blastocyst G. Loof D. Szabo V. Garg A. Kukalev L. Zea-Redondo R. Kempfer T.M. Sparks Yi. Zhang C.J. Thieme S. Carvalho A. Weise M. Balachandran T. Liehr L.R. Welch A.K. Hadjantonakis A. Pombo
December 19, 2015 / eLife Methylation of RNA polymerase II non-consensus Lysine residues marks early transcription in mammalian cells J.D. Dias T. Rito E. Torlai Triglia A. Kukalev C. Ferrai M. Chotalia E. Brookes H. Kimura A. Pombo
October 16, 2017 / Mol Syst Biol RNA polymerase II primes Polycomb-repressed developmental genes throughout terminal neuronal differentiation C. Ferrai E. Torlai Triglia J.R. Risner-Janiczek T. Rito O.J.L. Rackham I. De Santiago A. Kukalev M. Nicodemi A. Akalin M. Li M.A. Ungless A. Pombo
October 31, 2017 / Genome Biol Widespread activation of antisense transcription of the host genome during herpes simplex virus 1 infection E. Wyler J. Menegatti V. Franke C. Kocks A. Boltengagen T. Hennig K. Theil A. Rutkowski C. Ferrai L. Baer L. Kermas C. Friedel N. Rajewsky A. Akalin L. Dölken F. Grässer M. Landthaler