Scientific Publications Search Search Author Impact Factor Release Date Research Group Search Sort by RelevanceFrom A-ZAuthored onDate/Time RangeRelease date Order AscDesc Akalin, Altuna Dr. (75) Altmueller, Janine Dr.med. (1) Annibale, Paolo Dr. (1) Bahry, Ella Dr. (1) Barke, Niclas (1) Berruezo Llacuna, Maria (1) Birchmeier-Kohler, Carmen Prof. Dr. (3) Blume, Alexander Dr. (6) Borodina, Tatiana Dr. (1) Carvalho, Silvia Filipa (1) Cerda Jara, Cledi Alicia (1) Chekulaeva, Marina Dr. (2) Chen, Wei Prof. Dr. (1) Chu, Van Trung Dr. (1) Costanza, Mariantonia Dr. (2) Daumke, Oliver Prof. Dr. (4) Del Giudice, Simone (1) Deter, Aylina (1) Diecke, Sebastian Dr. (2) Di Virgilio, Michela Prof. Dr. (2) Driesner, Madlen (1) Emmenegger, Lisa (1) Escobar Fernandez, Helena Dr. (1) Faxel, Miriam (1) Freimuth, Jonas (1) Gerhardt, Holger Prof. Dr. (1) Ghanbari, Mahsa Dr. (1) Gil, Marine (1) Graf, Robin Dr. (1) Harabula, Izabela-Cezara (1) Haucke, Volker Professor (1) Herzog, Margareta (1) Hinz, Michael Dr. (2) Hirsekorn, Antje (4) Höpken, Uta Elisabeth PD Dr. (2) Hübner, Norbert Prof. Dr. (1) Irastorza Azcarate, Ibai Dr. (1) Janz, Martin Dr. (3) Junker, Jan Philipp Prof. Dr. (1) Keller, Lisa (1) Kempa, Stefan Dr. (2) Kirchner, Marieluise Dr. (1) Kocks, Christine Dr. (2) Kolesnichenko, Marina Dr. (3) Kühn, Ralf Dr. (1) Kukalev, Alexander Dr. (2) Lacadie, Scott Allen Dr. (3) Landthaler, Markus Prof. Dr. (6) Lohse, Martin Prof. Dr. (1) Lusatis, Simone (1) Marg, Andreas Dr. (1) Mastrobuoni, Guido Dr. (1) Mathas, Stephan Dr. (3) Meijer, Mandy Dr. (1) Merks, Anne Margarete Dr. (1) Mertins, Philipp Dr. (1) Monti, Remo (1) Müller, Thomas Dr. (1) Müthel, Stefanie (3) Ofenbauer, Andreas Dr. (1) Ohler, Uwe Prof. Dr. (10) Oliveras Martinez, Anna Dr. (1) Panakova, Daniela Dr. (1) Patarcic, Inga Dr. (1) Patone, Giannino Dr. (1) Pombo, Ana Prof. Dr. (3) Popp, Oliver Dr. (1) Preibisch, Stephan Dr. (1) Prigione, Alessandro Prof. Dr. (1) Quedenau, Claudia (1) Rajewsky, Klaus Prof. Dr. (2) Rajewsky, Nikolaus Prof. Dr. (9) Rathgeber, Anja (1) Rehm, Armin Dr. (1) Roske, Yvette Dr. (1) Rudolph, Ina-Maria Dr. (1) Rybak-Wolf, Agnieszka Dr. (1) Scheidereit, Claus Prof. Dr. (4) Schmidt-Ullrich, Ruth Dr. (1) Schmitt, Clemens Prof. Dr. (1) Selbach, Matthias Prof. Dr. (5) Serebreni, Leonid Dr. (1) Siffrin, Volker (1) Spuler, Simone Prof. (2) Szabo, Dominik (1) Thieme, Christoph Dr. (1) Tursun, Baris Dr. (4) Uyar, Bora Dr. (15) Vucicevic, Dubravka (2) Willimsky, Gerald Dr. (1) Willnow, Thomas Prof. Dr. (1) Winick-Ng, Warren Dr. (1) Woehler, Andrew Dr. (4) Wurmus, Ricardo (10) Wyler, Emanuel Dr. (5) Zampieri, Niccolo Dr. (1) Zauber, Henrik Dr. (1) Zea Redondo, Luna (1) Zinzen, Robert Patrick Dr. (1) (-) Franke, Vedran Dr. (23) 2015 (1) 2017 (2) 2018 (1) 2019 (4) 2020 (1) 2021 (6) 2022 (4) 2023 (4) AG Müller/Dechend (ECRC) (1) Animal Phenotyping (1) Biobank (87) (-) Bioinformatics and Omics Data Science (23) Bioinformatics of RNA Structure and Transcriptome Regulation (1) Biology of Malignant Lymphomas (3) Cancer Genetics and Cellular Stress Responses (1) Cellular Neurosciences (2) Computational Regulatory Genomics (1) Developmental Biology / Signal Transduction (3) Electron Microscopy (1) Epigenetic Regulation and Chromatin Architecture (2) Experimental Ultrahigh-Field MR (1) Genetics and Genomics of Cardiovascular Diseases (4) Genetics of Congenital Heart Disease (1) Genomics (2) Host-microbiome factors in cardiovascular disease (8) Hypertension-caused End-Organ Damage (1) Hypertension-Mediated End-Organ Damage (1) Immune Regulation and Cancer (1) Integrative Vascular Biology (3) Magnetic Resonance (1) Microenvironmental Regulation in Autoimmunity and Cancer (1) Mobile DNA (17) Molecular Biology of Peptide Hormones (7) Molecular Cardiovascular Research (1) Molecular Epidemiology (87) Molecular Genetics of Chronic Inflammation and Allergic Disease (4) Molecular Immunology and Gene Therapy (1) Myology (1) Neuroimmunology Laboratory (1) Non-coding RNAs and Mechanisms of Cytoplasmic Gene Regulation (4) Pluripotent Stem Cells (2) Proteome Dynamics (10) Proteomics (4) Proteomics and Metabolomics (6) Proteomics and Molecular Mechanisms of Neurodegenerative Diseases (2) Psychoneuroimmunology (1) RNA Biology and Posttranscriptional Regulation (8) Structural Biology of Membrane-Associated Processes (3) Systems Biology Imaging (2) Systems Biology of Gene Regulatory Elements (6) Translational Bioinformatics (8) Translational Oncology of Solid Tumors (4) Translational Tumorimmunology (1) Tumor heterogeneity and treatment resistance in pediatric cancer (1) 23 Results: Active Filter: Franke, Vedran Dr.Bioinformatics and Omics Data Science Sort: Result score Newest to oldest Oldest to newest April 01, 2015 / Bioinformatics genomation: a toolkit to summarize, annotate and visualize genomic intervals A. Akalin V. Franke K. Vlahoviček C.E. Mason D. Schübeler September 19, 2017 / Nat Commun RNA localization is a key determinant of neurite-enriched proteome A. Zappulo D. van den Bruck C. Ciolli Mattioli V. Franke K. Imami E. McShane M. Moreno-Estelles L. Calviello A. Filipchyk E. Peguero-Sanchez T. Müller A. Woehler C. Birchmeier E. Merino N. Rajewsky U. Ohler E.O. Mazzoni M. Selbach A. Akalin M. Chekulaeva October 31, 2017 / Genome Biol Widespread activation of antisense transcription of the host genome during herpes simplex virus 1 infection E. Wyler J. Menegatti V. Franke C. Kocks A. Boltengagen T. Hennig K. Theil A. Rutkowski C. Ferrai L. Baer L. Kermas C. Friedel N. Rajewsky A. Akalin L. Dölken F. Grässer M. Landthaler December 01, 2018 / GigaScience PiGx: reproducible genomics analysis pipelines with GNU Guix R. Wurmus B. Uyar B. Osberg V. Franke A. Gosdschan K. Wreczycka J. Ronen A. Akalin December 11, 2020 / Nat Commun Single-nucleus transcriptomics reveals functional compartmentalization in syncytial skeletal muscle cells M. Kim V. Franke B. Brandt E.D. Lowenstein V. Schöwel S. Spuler A. Akalin C. Birchmeier March 18, 2019 / Nucleic Acids Res Alternative 3' UTRs direct localization of functionally diverse protein isoforms in neuronal compartments C. Ciolli Mattioli A. Rom V. Franke K. Imami G. Arrey M. Terne A. Woehler A. Akalin I. Ulitsky M. Chekulaeva March 28, 2019 / Blood Autocrine LTA signaling drives NF-κB and JAK-STAT activity and myeloid gene expression in Hodgkin lymphoma L. von Hoff E. Kärgel V. Franke E. McShane K.W. Schulz-Beiss G. Patone N. Schleussner M. Kolesnichenko N. Hübner O. Daumke M. Selbach A. Akalin S. Mathas C. Scheidereit June 20, 2019 / Nucleic Acids Res HOT or not: examining the basis of high-occupancy target regions K. Wreczycka V. Franke B. Uyar R. Wurmus S. Bulut B. Tursun A. Akalin October 25, 2019 / Nat Commun Single-cell RNA-sequencing of herpes simplex virus 1-infected cells connects NRF2 activation to an antiviral program E. Wyler V. Franke J. Menegatti C. Kocks A. Boltengagen S. Praktiknjo B. Walch-Rückheim J. Bosse N. Rajewsky F. Grässer A. Akalin M. Landthaler December 06, 2021 / Genome Biol The SEQC2 epigenomics quality control (EpiQC) study J. Foox J. Nordlund C. Lalancette T. Gong M. Lacey S. Lent B.W. Langhorst V.K.C. Ponnaluri L. Williams K.R. Padmanabhan R. Cavalcante A. Lundmark D. Butler C. Mozsary J. Gurvitch J.M. Greally M. Suzuki M. Menor M. Nasu A. Alonso C. Sheridan A. Scherer S. Bruinsma G. Golda A. Muszynska P.P. Łabaj M.A. Campbell F. Wos A. Raine U. Liljedahl T. Axelsson C. Wang Z. Chen Z. Yang J. Li X. Yang H. Wang A. Melnick S. Guo A. Blume V. Franke I. Ibanez de Caceres C. Rodriguez-Antolin R. Rosas J.W. Davis J. Ishii D.B. Megherbi W. Xiao W. Liao J. Xu H. Hong B. Ning W. Tong A. Akalin Y. Wang Y. Deng C.E. Mason Pagination Current page 1 Page 2 Page 3 Next page Next › Last page Last »
April 01, 2015 / Bioinformatics genomation: a toolkit to summarize, annotate and visualize genomic intervals A. Akalin V. Franke K. Vlahoviček C.E. Mason D. Schübeler
September 19, 2017 / Nat Commun RNA localization is a key determinant of neurite-enriched proteome A. Zappulo D. van den Bruck C. Ciolli Mattioli V. Franke K. Imami E. McShane M. Moreno-Estelles L. Calviello A. Filipchyk E. Peguero-Sanchez T. Müller A. Woehler C. Birchmeier E. Merino N. Rajewsky U. Ohler E.O. Mazzoni M. Selbach A. Akalin M. Chekulaeva
October 31, 2017 / Genome Biol Widespread activation of antisense transcription of the host genome during herpes simplex virus 1 infection E. Wyler J. Menegatti V. Franke C. Kocks A. Boltengagen T. Hennig K. Theil A. Rutkowski C. Ferrai L. Baer L. Kermas C. Friedel N. Rajewsky A. Akalin L. Dölken F. Grässer M. Landthaler
December 01, 2018 / GigaScience PiGx: reproducible genomics analysis pipelines with GNU Guix R. Wurmus B. Uyar B. Osberg V. Franke A. Gosdschan K. Wreczycka J. Ronen A. Akalin
December 11, 2020 / Nat Commun Single-nucleus transcriptomics reveals functional compartmentalization in syncytial skeletal muscle cells M. Kim V. Franke B. Brandt E.D. Lowenstein V. Schöwel S. Spuler A. Akalin C. Birchmeier
March 18, 2019 / Nucleic Acids Res Alternative 3' UTRs direct localization of functionally diverse protein isoforms in neuronal compartments C. Ciolli Mattioli A. Rom V. Franke K. Imami G. Arrey M. Terne A. Woehler A. Akalin I. Ulitsky M. Chekulaeva
March 28, 2019 / Blood Autocrine LTA signaling drives NF-κB and JAK-STAT activity and myeloid gene expression in Hodgkin lymphoma L. von Hoff E. Kärgel V. Franke E. McShane K.W. Schulz-Beiss G. Patone N. Schleussner M. Kolesnichenko N. Hübner O. Daumke M. Selbach A. Akalin S. Mathas C. Scheidereit
June 20, 2019 / Nucleic Acids Res HOT or not: examining the basis of high-occupancy target regions K. Wreczycka V. Franke B. Uyar R. Wurmus S. Bulut B. Tursun A. Akalin
October 25, 2019 / Nat Commun Single-cell RNA-sequencing of herpes simplex virus 1-infected cells connects NRF2 activation to an antiviral program E. Wyler V. Franke J. Menegatti C. Kocks A. Boltengagen S. Praktiknjo B. Walch-Rückheim J. Bosse N. Rajewsky F. Grässer A. Akalin M. Landthaler
December 06, 2021 / Genome Biol The SEQC2 epigenomics quality control (EpiQC) study J. Foox J. Nordlund C. Lalancette T. Gong M. Lacey S. Lent B.W. Langhorst V.K.C. Ponnaluri L. Williams K.R. Padmanabhan R. Cavalcante A. Lundmark D. Butler C. Mozsary J. Gurvitch J.M. Greally M. Suzuki M. Menor M. Nasu A. Alonso C. Sheridan A. Scherer S. Bruinsma G. Golda A. Muszynska P.P. Łabaj M.A. Campbell F. Wos A. Raine U. Liljedahl T. Axelsson C. Wang Z. Chen Z. Yang J. Li X. Yang H. Wang A. Melnick S. Guo A. Blume V. Franke I. Ibanez de Caceres C. Rodriguez-Antolin R. Rosas J.W. Davis J. Ishii D.B. Megherbi W. Xiao W. Liao J. Xu H. Hong B. Ning W. Tong A. Akalin Y. Wang Y. Deng C.E. Mason