Scientific Publications Search Search Author Impact Factor Release Date Research Group Search Sort by RelevanceFrom A-ZAuthored onDate/Time RangeRelease date Order AscDesc Akalin, Altuna Dr. (73) Altmueller, Janine Dr.med. (1) Annibale, Paolo Dr. (1) Bahry, Ella Dr. (1) Barke, Niclas (1) Berruezo Llacuna, Maria (1) Birchmeier-Kohler, Carmen Prof. Dr. (3) Blume, Alexander Dr. (6) Borodina, Tatiana Dr. (1) Carvalho, Silvia Filipa (1) Chekulaeva, Marina Dr. (2) Chen, Wei Prof. Dr. (1) Chu, Van Trung Dr. (1) Costanza, Mariantonia Dr. (2) Daumke, Oliver Prof. Dr. (4) Del Giudice, Simone (1) Deter, Aylina (1) Diecke, Sebastian Dr. (2) Di Virgilio, Michela Prof. Dr. (2) Driesner, Madlen (1) Escobar Fernandez, Helena Dr. (1) Faxel, Miriam (1) Franke, Vedran Dr. (22) Freimuth, Jonas (1) Gerhardt, Holger Prof. Dr. (1) Ghanbari, Mahsa Dr. (1) Gil, Marine (1) Graf, Robin Dr. (1) Harabula, Izabela-Cezara (1) Haucke, Volker Professor (1) Hinz, Michael Dr. (2) Hirsekorn, Antje (4) Höpken, Uta Elisabeth PD Dr. (2) Hübner, Norbert Prof. Dr. (1) Irastorza Azcarate, Ibai Dr. (1) Janz, Martin Dr. (3) Junker, Jan Philipp Prof. Dr. (1) Keller, Lisa (1) Kempa, Stefan Dr. (1) Kirchner, Marieluise Dr. (1) Kocks, Christine Dr. (2) Lacadie, Scott Allen Dr. (3) Landthaler, Markus Prof. Dr. (5) Lohse, Martin Prof. Dr. (1) Lusatis, Simone (1) Marg, Andreas Dr. (1) Meijer, Mandy Dr. (1) Merks, Anne Margarete Dr. (1) Mertins, Philipp Dr. (1) Monti, Remo (1) Müller, Thomas Dr. (1) Müthel, Stefanie (3) Ofenbauer, Andreas Dr. (1) Panakova, Daniela Dr. (1) Patarcic, Inga Dr. (1) Patone, Giannino Dr. (1) Pombo, Ana Prof. Dr. (3) Popp, Oliver Dr. (1) Preibisch, Stephan Dr. (1) Prigione, Alessandro Prof. Dr. (1) Quedenau, Claudia (1) Rajewsky, Klaus Prof. Dr. (2) Rajewsky, Nikolaus Prof. Dr. (8) Rathgeber, Anja (1) Rehm, Armin Dr. (1) Roske, Yvette Dr. (1) Rrustemi, Trendelina (1) Rudolph, Ina-Maria Dr. (1) Scheidereit, Claus Prof. Dr. (4) Schmidt-Ullrich, Ruth Dr. (1) Schmitt, Clemens Prof. Dr. (1) Selbach, Matthias Prof. Dr. (5) Serebreni, Leonid Dr. (1) Siffrin, Volker (1) Spuler, Simone Prof. (2) Szabo, Dominik (1) Thieme, Christoph Dr. (1) Uyar, Bora Dr. (15) Vucicevic, Dubravka (2) Willimsky, Gerald Dr. (1) Willnow, Thomas Prof. Dr. (1) Winick-Ng, Warren Dr. (1) Woehler, Andrew Dr. (3) Wurmus, Ricardo (9) Wyler, Emanuel Dr. (4) Zampieri, Niccolo Dr. (1) Zauber, Henrik Dr. (1) Zea Redondo, Luna (1) (-) Herzog, Margareta (1) (-) Kühn, Ralf Dr. (1) (-) Kukalev, Alexander Dr. (2) (-) Mathas, Stephan Dr. (3) (-) Ohler, Uwe Prof. Dr. (10) (-) Tursun, Baris Dr. (4) 2017 (4) 2018 (2) 2019 (6) 2020 (1) 2021 (2) 2022 (3) 2023 (3) Advanced Light Microscopy (2) AG Müller/Dechend (ECRC) (1) Animal Phenotyping (2) (-) Bioinformatics and Omics Data Science (21) Biology of Malignant Lymphomas (70) Cancer Genetics and Cellular Stress Responses (3) Cellular Neurosciences (1) Computational Regulatory Genomics (140) Developmental Biology / Signal Transduction (5) Developmental Neurobiology (1) Development and Function of Neural Circuits (1) Endocrinology, Diabetes and Nutritional Medicine (1) Epigenetic Regulation and Chromatin Architecture (8) From Cell States to Function (2) Genetics and Genomics of Cardiovascular Diseases (14) Genome Diversification & Integrity (2) Genome Engineering & Disease Models (146) Hypertension-caused End-Organ Damage (1) Hypertension-Mediated End-Organ Damage (1) Immune Dysregulations in Oncology (1) Immune Mechanisms and Human Antibodies (3) Immune Regulation and Cancer (13) Integrative Vascular Biology (1) Mathematical Modelling of Cellular Processes (1) Mechanism-based Cancer Therapies (4) Microenvironmental Regulation in Autoimmunity and Cancer (1) Molecular Biology of Peptide Hormones (1) Molecular Cardiovascular Research (2) Molecular Immunology and Gene Therapy (1) Molecular Physiology of Somatic Sensation (1) Myology (4) Non-coding RNAs and Mechanisms of Cytoplasmic Gene Regulation (1) Organoids (1) Pancreatic Organoid Research and Disease Modeling (1) Pluripotent Stem Cells (5) Protein Production and Characterization (1) Proteome Dynamics (10) Proteomics (4) Proteomics and Metabolomics (2) Proteomics and Molecular Mechanisms of Neurodegenerative Diseases (2) Psychoneuroimmunology (1) Quantitative Developmental Biology (3) Quantitative Stem Cell Biology (1) RNA Biology and Posttranscriptional Regulation (11) Structural Biology of Membrane-Associated Processes (4) Synaptic Transmission and Plasticity (1) Systems Biology Imaging (2) Systems Biology of Gene Regulatory Elements (13) Transgenics (146) Translational Bioinformatics (2) Translational Cardiology and Functional Genomics (4) Translational Tumorimmunology (1) 21 Results: Active Filter: Herzog, MargaretaKühn, Ralf Dr.Kukalev, Alexander Dr.Mathas, Stephan Dr.Ohler, Uwe Prof. Dr.Tursun, Baris Dr.Bioinformatics and Omics Data Science Sort: Result score Newest to oldest Oldest to newest June 20, 2019 / Nucleic Acids Res HOT or not: examining the basis of high-occupancy target regions K. Wreczycka V. Franke B. Uyar R. Wurmus S. Bulut B. Tursun A. Akalin December 01, 2019 / Aging Cell The conserved histone chaperone LIN-53 is required for normal lifespan and maintenance of muscle integrity in Caenorhabditis elegans. S. Müthel B. Uyar M. He A. Krause B. Vitrinel S. Bulut D. Vasiljevic I. Marchal S. Kempa A. Akalin B. Tursun March 28, 2019 / Blood Autocrine LTA signaling drives NF-κB and JAK-STAT activity and myeloid gene expression in Hodgkin lymphoma L. von Hoff E. Kärgel V. Franke E. McShane K.W. Schulz-Beiss G. Patone N. Schleussner M. Kolesnichenko N. Hübner O. Daumke M. Selbach A. Akalin S. Mathas C. Scheidereit February 21, 2019 / Genome Biol Reproducible inference of transcription factor footprints in ATAC-seq and DNase-seq datasets using protocol-specific bias modeling A. Karabacak Calviello A. Hirsekorn R. Wurmus D. Yusuf U. Ohler April 09, 2019 / Nat Commun Global identification of functional microRNA-mRNA interactions in Drosophila H.H. Wessels S. Lebedeva A. Hirsekorn R. Wurmus A. Akalin N. Mukherjee U. Ohler November 07, 2023 / Nat Commun Transcriptional reprogramming by mutated IRF4 in lymphoma N. Schleussner P. Cauchy V. Franke M. Giefing O. Fornes N. Vankadari S.A. Assi M. Costanza M.A. Weniger A. Akalin I. Anagnostopoulos T. Bukur M.G. Casarotto F. Damm O. Daumke B. Edginton-White J.C.M. Gebhardt M. Grau S. Grunwald M.L. Hansmann S. Hartmann L. Huber E. Kärgel S. Lusatis D. Noerenberg N. Obier U. Pannicke A. Fischer A. Reisser A. Rosenwald K. Schwarz S. Sundararaj A. Weilemann W. Winkler W. Xu G. Lenz K. Rajewsky W.W. Wasserman P.N. Cockerill C. Scheidereit R. Siebert R. Küppers R. Grosschedl M. Janz C. Bonifer S. Mathas July 01, 2022 / Nat Genet Multiomic atlas with functional stratification and developmental dynamics of zebrafish cis-regulatory elements D. Baranasic M. Hörtenhuber P.J. Balwierz T. Zehnder A.K. Mukarram C. Nepal C. Várnai Y. Hadzhiev A. Jimenez-Gonzalez N. Li J. Wragg F.M. D'Orazio D. Relic M. Pachkov N. Díaz B. Hernández-Rodríguez Z. Chen M. Stoiber M. Dong I. Stevens S.E. Ross A. Eagle R. Martin O. Obasaju S. Rastegar A.C. McGarvey W. Kopp E. Chambers D. Wang H.R. Kim R.D. Acemel S. Naranjo M. Łapiński V. Chong S. Mathavan B. Peers T. Sauka-Spengler M. Vingron P. Carninci U. Ohler S.A. Lacadie S.M. Burgess C. Winata F. van Eeden J.M. Vaquerizas J.L. Gómez-Skarmeta D. Onichtchouk B.J. Brown O. Bogdanovic E. van Nimwegen M. Westerfield F.C Wardle C.O. Daub B. Lenhard F. Müller January 13, 2022 / Cell Genom Single-cell-resolved dynamics of chromatin architecture delineate cell and regulatory states in zebrafish embryos A.C. McGarvey W. Kopp D. Vučićević K. Mattonet R. Kempfer A. Hirsekorn I. Bilić M. Gil A. Trinks A.M. Merks D. Panáková A. Pombo A. Akalin J.P. Junker D.Y.R. Stainier D. Garfield U. Ohler S.A. Lacadie February 01, 2022 / Nat Mach Intell Simultaneous dimensionality reduction and integration for single-cell ATAC-seq data using deep learning W. Kopp A. Akalin U. Ohler January 01, 2023 / Sci Immunol A multimorphic mutation in IRF4 causes human autosomal dominant combined immunodeficiency O. Fornes A. Jia H.S. Kuehn Q. Min U. Pannicke N. Schleussner R. Thouenon Z. Yu M. de Los Angeles Astbury C.M. Biggs M. Galicchio J.A. Garcia-Campos S. Gismondi G. Gonzalez Villarreal K.J. Hildebrand M. Hönig J. Hou D. Moshous S. Pittaluga X. Qian J. Rozmus A.S. Schulz A.T. Staines-Boone B. Sun J. Sun S. Uwe E. Venegas-Montoya W. Wang X. Wang W. Ying X. Zhai Q. Zhou A. Akalin I. André T.F.E. Barth B. Baumann A. Brüstle G. Burgio J.C. Bustamante J.L. Casanova M.G. Casarotto M. Cavazzana L. Chentout I.A. Cockburn M. Costanza C. Cui O. Daumke K.L. Del Bel H. Eibel X. Feng V. Franke J.C.M. Gebhardt A. Götz S. Grunwald B. Hoareau T.R. Hughes E.M. Jacobsen M. Janz A. Jolma C. Lagresle-Peyrou N. Lai Y. Li S. Lin H.Y. Lu S.O. Lugo-Reyes X. Meng P. Möller N. Moreno-Corona J.E. Niemela G. Novakovsky J.J. Perez-Caraballo C. Picard L. Poggi M.E. Puig-Lombardi K.L. Randall A. Reisser Y. Schmitt S. Seneviratne M. Sharma J. Stoddard S. Sundararaj H. Sutton L.Q. Tran Y. Wang W.W. Wasserman Z. Wen W. Winkler E. Xiong A.W.H. Yang M. Yu L. Zhang H. Zhang Q. Zhao X. Zhen A. Enders S. Kracker R. Martinez-Barricarte S. Mathas S.D. Rosenzweig K. Schwarz S.E. Turvey J.Y. Wang Pagination First page « First Previous page ‹ Previous Page 1 Current page 2 Page 3 Next page Next › Last page Last »
June 20, 2019 / Nucleic Acids Res HOT or not: examining the basis of high-occupancy target regions K. Wreczycka V. Franke B. Uyar R. Wurmus S. Bulut B. Tursun A. Akalin
December 01, 2019 / Aging Cell The conserved histone chaperone LIN-53 is required for normal lifespan and maintenance of muscle integrity in Caenorhabditis elegans. S. Müthel B. Uyar M. He A. Krause B. Vitrinel S. Bulut D. Vasiljevic I. Marchal S. Kempa A. Akalin B. Tursun
March 28, 2019 / Blood Autocrine LTA signaling drives NF-κB and JAK-STAT activity and myeloid gene expression in Hodgkin lymphoma L. von Hoff E. Kärgel V. Franke E. McShane K.W. Schulz-Beiss G. Patone N. Schleussner M. Kolesnichenko N. Hübner O. Daumke M. Selbach A. Akalin S. Mathas C. Scheidereit
February 21, 2019 / Genome Biol Reproducible inference of transcription factor footprints in ATAC-seq and DNase-seq datasets using protocol-specific bias modeling A. Karabacak Calviello A. Hirsekorn R. Wurmus D. Yusuf U. Ohler
April 09, 2019 / Nat Commun Global identification of functional microRNA-mRNA interactions in Drosophila H.H. Wessels S. Lebedeva A. Hirsekorn R. Wurmus A. Akalin N. Mukherjee U. Ohler
November 07, 2023 / Nat Commun Transcriptional reprogramming by mutated IRF4 in lymphoma N. Schleussner P. Cauchy V. Franke M. Giefing O. Fornes N. Vankadari S.A. Assi M. Costanza M.A. Weniger A. Akalin I. Anagnostopoulos T. Bukur M.G. Casarotto F. Damm O. Daumke B. Edginton-White J.C.M. Gebhardt M. Grau S. Grunwald M.L. Hansmann S. Hartmann L. Huber E. Kärgel S. Lusatis D. Noerenberg N. Obier U. Pannicke A. Fischer A. Reisser A. Rosenwald K. Schwarz S. Sundararaj A. Weilemann W. Winkler W. Xu G. Lenz K. Rajewsky W.W. Wasserman P.N. Cockerill C. Scheidereit R. Siebert R. Küppers R. Grosschedl M. Janz C. Bonifer S. Mathas
July 01, 2022 / Nat Genet Multiomic atlas with functional stratification and developmental dynamics of zebrafish cis-regulatory elements D. Baranasic M. Hörtenhuber P.J. Balwierz T. Zehnder A.K. Mukarram C. Nepal C. Várnai Y. Hadzhiev A. Jimenez-Gonzalez N. Li J. Wragg F.M. D'Orazio D. Relic M. Pachkov N. Díaz B. Hernández-Rodríguez Z. Chen M. Stoiber M. Dong I. Stevens S.E. Ross A. Eagle R. Martin O. Obasaju S. Rastegar A.C. McGarvey W. Kopp E. Chambers D. Wang H.R. Kim R.D. Acemel S. Naranjo M. Łapiński V. Chong S. Mathavan B. Peers T. Sauka-Spengler M. Vingron P. Carninci U. Ohler S.A. Lacadie S.M. Burgess C. Winata F. van Eeden J.M. Vaquerizas J.L. Gómez-Skarmeta D. Onichtchouk B.J. Brown O. Bogdanovic E. van Nimwegen M. Westerfield F.C Wardle C.O. Daub B. Lenhard F. Müller
January 13, 2022 / Cell Genom Single-cell-resolved dynamics of chromatin architecture delineate cell and regulatory states in zebrafish embryos A.C. McGarvey W. Kopp D. Vučićević K. Mattonet R. Kempfer A. Hirsekorn I. Bilić M. Gil A. Trinks A.M. Merks D. Panáková A. Pombo A. Akalin J.P. Junker D.Y.R. Stainier D. Garfield U. Ohler S.A. Lacadie
February 01, 2022 / Nat Mach Intell Simultaneous dimensionality reduction and integration for single-cell ATAC-seq data using deep learning W. Kopp A. Akalin U. Ohler
January 01, 2023 / Sci Immunol A multimorphic mutation in IRF4 causes human autosomal dominant combined immunodeficiency O. Fornes A. Jia H.S. Kuehn Q. Min U. Pannicke N. Schleussner R. Thouenon Z. Yu M. de Los Angeles Astbury C.M. Biggs M. Galicchio J.A. Garcia-Campos S. Gismondi G. Gonzalez Villarreal K.J. Hildebrand M. Hönig J. Hou D. Moshous S. Pittaluga X. Qian J. Rozmus A.S. Schulz A.T. Staines-Boone B. Sun J. Sun S. Uwe E. Venegas-Montoya W. Wang X. Wang W. Ying X. Zhai Q. Zhou A. Akalin I. André T.F.E. Barth B. Baumann A. Brüstle G. Burgio J.C. Bustamante J.L. Casanova M.G. Casarotto M. Cavazzana L. Chentout I.A. Cockburn M. Costanza C. Cui O. Daumke K.L. Del Bel H. Eibel X. Feng V. Franke J.C.M. Gebhardt A. Götz S. Grunwald B. Hoareau T.R. Hughes E.M. Jacobsen M. Janz A. Jolma C. Lagresle-Peyrou N. Lai Y. Li S. Lin H.Y. Lu S.O. Lugo-Reyes X. Meng P. Möller N. Moreno-Corona J.E. Niemela G. Novakovsky J.J. Perez-Caraballo C. Picard L. Poggi M.E. Puig-Lombardi K.L. Randall A. Reisser Y. Schmitt S. Seneviratne M. Sharma J. Stoddard S. Sundararaj H. Sutton L.Q. Tran Y. Wang W.W. Wasserman Z. Wen W. Winkler E. Xiong A.W.H. Yang M. Yu L. Zhang H. Zhang Q. Zhao X. Zhen A. Enders S. Kracker R. Martinez-Barricarte S. Mathas S.D. Rosenzweig K. Schwarz S.E. Turvey J.Y. Wang