Scientific Publications Search Search Author Impact Factor Release Date Research Group Search Sort by RelevanceFrom A-ZAuthored onDate/Time RangeRelease date Order AscDesc Akalin, Altuna Dr. (75) Altmueller, Janine Dr.med. (1) Annibale, Paolo Dr. (1) Bahry, Ella Dr. (1) Barke, Niclas (1) Berruezo Llacuna, Maria (1) Birchmeier-Kohler, Carmen Prof. Dr. (3) Blume, Alexander Dr. (6) Borodina, Tatiana Dr. (1) Carvalho, Silvia Filipa (1) Cerda Jara, Cledi Alicia (1) Chekulaeva, Marina Dr. (2) Chen, Wei Prof. Dr. (1) Chu, Van Trung Dr. (1) Costanza, Mariantonia Dr. (2) Daumke, Oliver Prof. Dr. (4) Del Giudice, Simone (1) Deter, Aylina (1) Diecke, Sebastian Dr. (2) Di Virgilio, Michela Prof. Dr. (2) Emmenegger, Lisa (1) Escobar Fernandez, Helena Dr. (1) Faxel, Miriam (1) Franke, Vedran Dr. (23) Freimuth, Jonas (1) Gerhardt, Holger Prof. Dr. (1) Ghanbari, Mahsa Dr. (1) Gil, Marine (1) Graf, Robin Dr. (1) Harabula, Izabela-Cezara (1) Haucke, Volker Professor (1) Hinz, Michael Dr. (2) Hirsekorn, Antje (4) Hübner, Norbert Prof. Dr. (1) Irastorza Azcarate, Ibai Dr. (1) Janz, Martin Dr. (3) Junker, Jan Philipp Prof. Dr. (1) Keller, Lisa (1) Kempa, Stefan Dr. (2) Kirchner, Marieluise Dr. (1) Kolesnichenko, Marina Dr. (3) Kühn, Ralf Dr. (1) Lacadie, Scott Allen Dr. (3) Landthaler, Markus Prof. Dr. (6) Lohse, Martin Prof. Dr. (1) Lusatis, Simone (1) Marg, Andreas Dr. (1) Mastrobuoni, Guido Dr. (1) Mathas, Stephan Dr. (3) Meijer, Mandy Dr. (1) Merks, Anne Margarete Dr. (1) Mertins, Philipp Dr. (1) Monti, Remo (1) Müthel, Stefanie (3) Ofenbauer, Andreas Dr. (1) Oliveras Martinez, Anna Dr. (1) Panakova, Daniela Dr. (1) Patarcic, Inga Dr. (1) Patone, Giannino Dr. (1) Pombo, Ana Prof. Dr. (3) Popp, Oliver Dr. (1) Preibisch, Stephan Dr. (1) Prigione, Alessandro Prof. Dr. (1) Quedenau, Claudia (1) Rajewsky, Klaus Prof. Dr. (2) Rajewsky, Nikolaus Prof. Dr. (9) Rathgeber, Anja (1) Rehm, Armin Dr. (1) Roske, Yvette Dr. (1) Rudolph, Ina-Maria Dr. (1) Rybak-Wolf, Agnieszka Dr. (1) Scheidereit, Claus Prof. Dr. (4) Schmidt-Ullrich, Ruth Dr. (1) Schmitt, Clemens Prof. Dr. (1) Selbach, Matthias Prof. Dr. (5) Serebreni, Leonid Dr. (1) Siffrin, Volker (1) Spuler, Simone Prof. (2) Szabo, Dominik (1) Thieme, Christoph Dr. (1) Tursun, Baris Dr. (4) Uyar, Bora Dr. (15) Vucicevic, Dubravka (2) Willimsky, Gerald Dr. (1) Willnow, Thomas Prof. Dr. (1) Winick-Ng, Warren Dr. (1) Woehler, Andrew Dr. (4) Wurmus, Ricardo (10) Wyler, Emanuel Dr. (5) Zampieri, Niccolo Dr. (1) Zauber, Henrik Dr. (1) Zea Redondo, Luna (1) Zinzen, Robert Patrick Dr. (1) (-) Driesner, Madlen (1) (-) Herzog, Margareta (1) (-) Höpken, Uta Elisabeth PD Dr. (2) (-) Kocks, Christine Dr. (2) (-) Kukalev, Alexander Dr. (2) (-) Müller, Thomas Dr. (1) (-) Ohler, Uwe Prof. Dr. (10) 2017 (5) 2019 (4) 2020 (2) 2021 (4) 2022 (3) Advanced Light Microscopy (1) AG Schreiber [ECRC] (1) Animal Phenotyping (1) (-) Bioinformatics and Omics Data Science (18) Biology of Malignant Lymphomas (4) Cancer Genetics and Cellular Stress Responses (1) Chemical Biology (1) Computational methodologies and omic analytics (1) Computational Regulatory Genomics (145) Developmental Biology / Signal Transduction (28) Developmental Neurobiology (1) Epigenetic Regulation and Chromatin Architecture (10) From Cell States to Function (3) Genetics and Genomics of Cardiovascular Diseases (11) Genetics of Metabolic and Reproductive Disorders (3) Genome Diversification & Integrity (2) Genome Engineering & Disease Models (6) Genomics (3) Immune Mechanisms and Human Antibodies (2) Immune Regulation and Cancer (7) Integrative Vascular Biology (1) Mathematical Cell Physiology (1) Mathematical Modelling of Cellular Processes (2) Mechanism-based Cancer Therapies (1) Microenvironmental Regulation in Autoimmunity and Cancer (81) Molecular Biology of Peptide Hormones (1) Molecular Cardiovascular Research (2) Molecular Immunology and Gene Therapy (2) Molecular Physiology of Somatic Sensation (2) Myology (1) Nephrology and Inflammatory Vascular Diseases (2) Neural Circuits and Behaviour (1) Neuroimmunology Laboratory (1) Non-coding RNAs and Mechanisms of Cytoplasmic Gene Regulation (1) Pancreatic Organoid Research and Disease Modeling (1) Pluripotent Stem Cells (2) Proteome Dynamics (10) Proteomics (3) Proteomics and Metabolomics (1) Proteomics and Molecular Mechanisms of Neurodegenerative Diseases (1) Psychoneuroimmunology (1) Quantitative Developmental Biology (3) RNA Biology and Posttranscriptional Regulation (18) Screening Unit (1) Structural Biology of Membrane-Associated Processes (1) Systems Biology Imaging (1) Systems Biology of Gene Regulatory Elements (29) Transgenics (6) Translational Bioinformatics (6) Translational Cardiology and Functional Genomics (2) Translational Tumorimmunology (26) 18 Results: Active Filter: Driesner, MadlenHerzog, MargaretaHöpken, Uta Elisabeth PD Dr.Kocks, Christine Dr.Kukalev, Alexander Dr.Müller, Thomas Dr.Ohler, Uwe Prof. Dr.Bioinformatics and Omics Data Science Sort: Result score Newest to oldest Oldest to newest April 13, 2021 / Cell Rep Parallel genetics of regulatory sequences using scalable genome editing in vivo J.J. Froehlich B. Uyar M. Herzog K. Theil P. Glažar A. Akalin N. Rajewsky January 13, 2022 / Cell Genom Single-cell-resolved dynamics of chromatin architecture delineate cell and regulatory states in zebrafish embryos A.C. McGarvey W. Kopp D. Vučićević K. Mattonet R. Kempfer A. Hirsekorn I. Bilić M. Gil A. Trinks A.M. Merks D. Panáková A. Pombo A. Akalin J.P. Junker D.Y.R. Stainier D. Garfield U. Ohler S.A. Lacadie February, 2022 / Nat Mach Intell Simultaneous dimensionality reduction and integration for single-cell ATAC-seq data using deep learning W. Kopp A. Akalin U. Ohler October 25, 2019 / Nat Commun Single-cell RNA-sequencing of herpes simplex virus 1-infected cells connects NRF2 activation to an antiviral program E. Wyler V. Franke J. Menegatti C. Kocks A. Boltengagen S. Praktiknjo B. Walch-Rückheim J. Bosse N. Rajewsky F. Grässer A. Akalin M. Landthaler June 02, 2017 / Nucleic Acids Res RCAS: an RNA centric annotation system for transcriptome-wide regions of interest B. Uyar D. Yusuf R. Wurmus N. Rajewsky U. Ohler A. Akalin July 03, 2017 / Nucleic Acids Res The RNA workbench: best practices for RNA and high-throughput sequencing bioinformatics in Galaxy B.A. Grüning J. Fallmann D. Yusuf S. Will A. Erxleben F. Eggenhofer T. Houwaart B. Batut P. Videm A. Bagnacani M. Wolfien S.C. Lott Y. Hoogstrate W.R. Hess O. Wolkenhauer S. Hoffmann A. Akalin U. Ohler P.F. Stadler R. Backofen October 05, 2020 / J Exp Med PDGFA-associated protein 1 protects mature B lymphocytes from stress-induced cell death and promotes antibody gene diversification V. Delgado-Benito M. Berruezo-Llacuna R. Altwasser W. Winkler D. Sundaravinayagam S. Balasubramanian M. Caganova R. Graf A. Rahjouei M.T. Henke M. Driesner L. Keller A. Prigione M. Janz A. Akalin M. Di Virgilio July 13, 2020 / Nat Commun Deep learning for genomics using Janggu W. Kopp R. Monti A. Tamburrini U. Ohler A. Akalin January 25, 2019 / Nucleic Acids Res Deciphering human ribonucleoprotein regulatory networks N. Mukherjee H.H. Wessels S. Lebedeva M. Sajek M. Ghanbari A. Garzia A. Munteanu D. Yusuf T. Farazi J.I. Hoell K.M. Akat A. Akalin T. Tuschl U. Ohler March 15, 2021 / EMBO J Transcriptional repression of NFKBIA triggers constitutive IKK- and proteasome-independent p65/RelA activation in senescence M. Kolesnichenko N. Mikuda U.E. Höpken E. Kärgel B. Uyar A.B. Tufan M. Milanovic W. Sun I. Krahn K. Schleich L. von Hoff M. Hinz M. Willenbrock S. Jungmann A. Akalin S. Lee R. Schmidt-Ullrich C.A. Schmitt C. Scheidereit Pagination Current page 1 Page 2 Next page Next › Last page Last »
April 13, 2021 / Cell Rep Parallel genetics of regulatory sequences using scalable genome editing in vivo J.J. Froehlich B. Uyar M. Herzog K. Theil P. Glažar A. Akalin N. Rajewsky
January 13, 2022 / Cell Genom Single-cell-resolved dynamics of chromatin architecture delineate cell and regulatory states in zebrafish embryos A.C. McGarvey W. Kopp D. Vučićević K. Mattonet R. Kempfer A. Hirsekorn I. Bilić M. Gil A. Trinks A.M. Merks D. Panáková A. Pombo A. Akalin J.P. Junker D.Y.R. Stainier D. Garfield U. Ohler S.A. Lacadie
February, 2022 / Nat Mach Intell Simultaneous dimensionality reduction and integration for single-cell ATAC-seq data using deep learning W. Kopp A. Akalin U. Ohler
October 25, 2019 / Nat Commun Single-cell RNA-sequencing of herpes simplex virus 1-infected cells connects NRF2 activation to an antiviral program E. Wyler V. Franke J. Menegatti C. Kocks A. Boltengagen S. Praktiknjo B. Walch-Rückheim J. Bosse N. Rajewsky F. Grässer A. Akalin M. Landthaler
June 02, 2017 / Nucleic Acids Res RCAS: an RNA centric annotation system for transcriptome-wide regions of interest B. Uyar D. Yusuf R. Wurmus N. Rajewsky U. Ohler A. Akalin
July 03, 2017 / Nucleic Acids Res The RNA workbench: best practices for RNA and high-throughput sequencing bioinformatics in Galaxy B.A. Grüning J. Fallmann D. Yusuf S. Will A. Erxleben F. Eggenhofer T. Houwaart B. Batut P. Videm A. Bagnacani M. Wolfien S.C. Lott Y. Hoogstrate W.R. Hess O. Wolkenhauer S. Hoffmann A. Akalin U. Ohler P.F. Stadler R. Backofen
October 05, 2020 / J Exp Med PDGFA-associated protein 1 protects mature B lymphocytes from stress-induced cell death and promotes antibody gene diversification V. Delgado-Benito M. Berruezo-Llacuna R. Altwasser W. Winkler D. Sundaravinayagam S. Balasubramanian M. Caganova R. Graf A. Rahjouei M.T. Henke M. Driesner L. Keller A. Prigione M. Janz A. Akalin M. Di Virgilio
July 13, 2020 / Nat Commun Deep learning for genomics using Janggu W. Kopp R. Monti A. Tamburrini U. Ohler A. Akalin
January 25, 2019 / Nucleic Acids Res Deciphering human ribonucleoprotein regulatory networks N. Mukherjee H.H. Wessels S. Lebedeva M. Sajek M. Ghanbari A. Garzia A. Munteanu D. Yusuf T. Farazi J.I. Hoell K.M. Akat A. Akalin T. Tuschl U. Ohler
March 15, 2021 / EMBO J Transcriptional repression of NFKBIA triggers constitutive IKK- and proteasome-independent p65/RelA activation in senescence M. Kolesnichenko N. Mikuda U.E. Höpken E. Kärgel B. Uyar A.B. Tufan M. Milanovic W. Sun I. Krahn K. Schleich L. von Hoff M. Hinz M. Willenbrock S. Jungmann A. Akalin S. Lee R. Schmidt-Ullrich C.A. Schmitt C. Scheidereit