Scientific Publications Search Search Author Impact Factor Release Date Research Group Search Sort by RelevanceFrom A-ZAuthored onDate/Time RangeRelease date Order AscDesc Altmueller, Janine Dr.med. (1) Annibale, Paolo Dr. (1) Bahry, Ella Dr. (1) Barke, Niclas (1) Berruezo Llacuna, Maria (1) Birchmeier-Kohler, Carmen Prof. Dr. (3) Blume, Alexander Dr. (6) Borodina, Tatiana Dr. (1) Carvalho, Silvia Filipa (1) Chekulaeva, Marina Dr. (2) Chen, Wei Prof. Dr. (1) Chu, Van Trung Dr. (1) Costanza, Mariantonia Dr. (2) Daumke, Oliver Prof. Dr. (4) Del Giudice, Simone (1) Deter, Aylina (1) Diecke, Sebastian Dr. (2) Di Virgilio, Michela Prof. Dr. (2) Driesner, Madlen (1) Escobar Fernandez, Helena Dr. (1) Faxel, Miriam (1) Franke, Vedran Dr. (22) Freimuth, Jonas (1) Gerhardt, Holger Prof. Dr. (1) Ghanbari, Mahsa Dr. (1) Gil, Marine (1) Graf, Robin Dr. (1) Harabula, Izabela-Cezara (1) Haucke, Volker Professor (1) Herzog, Margareta (1) Hinz, Michael Dr. (2) Hirsekorn, Antje (4) Höpken, Uta Elisabeth PD Dr. (2) Hübner, Norbert Prof. Dr. (1) Irastorza Azcarate, Ibai Dr. (1) Janz, Martin Dr. (3) Junker, Jan Philipp Prof. Dr. (1) Keller, Lisa (1) Kempa, Stefan Dr. (1) Kirchner, Marieluise Dr. (1) Kocks, Christine Dr. (2) Kühn, Ralf Dr. (1) Kukalev, Alexander Dr. (2) Lacadie, Scott Allen Dr. (3) Landthaler, Markus Prof. Dr. (5) Lohse, Martin Prof. Dr. (1) Lusatis, Simone (1) Marg, Andreas Dr. (1) Mathas, Stephan Dr. (3) Meijer, Mandy Dr. (1) Merks, Anne Margarete Dr. (1) Mertins, Philipp Dr. (1) Monti, Remo (1) Müller, Thomas Dr. (1) Müthel, Stefanie (3) Ofenbauer, Andreas Dr. (1) Ohler, Uwe Prof. Dr. (10) Panakova, Daniela Dr. (1) Patarcic, Inga Dr. (1) Patone, Giannino Dr. (1) Pombo, Ana Prof. Dr. (3) Popp, Oliver Dr. (1) Preibisch, Stephan Dr. (1) Quedenau, Claudia (1) Rajewsky, Klaus Prof. Dr. (2) Rajewsky, Nikolaus Prof. Dr. (8) Rathgeber, Anja (1) Rehm, Armin Dr. (1) Roske, Yvette Dr. (1) Rrustemi, Trendelina (1) Rudolph, Ina-Maria Dr. (1) Scheidereit, Claus Prof. Dr. (4) Schmidt-Ullrich, Ruth Dr. (1) Schmitt, Clemens Prof. Dr. (1) Selbach, Matthias Prof. Dr. (5) Serebreni, Leonid Dr. (1) Siffrin, Volker (1) Spuler, Simone Prof. (2) Szabo, Dominik (1) Thieme, Christoph Dr. (1) Tursun, Baris Dr. (4) Uyar, Bora Dr. (15) Vucicevic, Dubravka (2) Willimsky, Gerald Dr. (1) Willnow, Thomas Prof. Dr. (1) Winick-Ng, Warren Dr. (1) Woehler, Andrew Dr. (3) Wurmus, Ricardo (9) Wyler, Emanuel Dr. (4) Zampieri, Niccolo Dr. (1) Zauber, Henrik Dr. (1) Zea Redondo, Luna (1) (-) Akalin, Altuna Dr. (73) (-) Prigione, Alessandro Prof. Dr. (1) 2006 (2) 2007 (1) 2008 (1) 2009 (3) 2010 (3) 2011 (1) 2012 (4) 2013 (3) 2014 (3) 2015 (3) 2017 (6) 2018 (6) 2019 (9) 2020 (7) 2021 (8) 2022 (6) 2023 (6) 2024 (1) Advanced Light Microscopy (3) Anchored Signalling (2) Animal Phenotyping (1) (-) Bioinformatics and Omics Data Science (73) Biology of Malignant Lymphomas (4) Cancer Genetics and Cellular Stress Responses (2) Cellular Neurosciences (3) Clinic of Psychiatry / Modul Psychiatry of Aging (1) Computational Regulatory Genomics (9) Developmental Biology / Signal Transduction (28) Developmental Neurobiology (2) Development and Function of Neural Circuits (1) Electron Microscopy (1) Epigenetic Regulation and Chromatin Architecture (4) Gastrointestinal Barrier, Regeneration and Carcinogenesis (1) Genetics and Genomics of Cardiovascular Diseases (5) Genetics of Congenital Heart Disease (1) Genetics of Metabolic and Reproductive Disorders (1) Genome Diversification & Integrity (3) Genome Engineering & Disease Models (2) Genomics (2) Immune Regulation and Cancer (6) Integrative Vascular Biology (1) Intracellular Proteolysis (5) Mathematical Cell Physiology (114) Mathematical Modelling of Cellular Processes (2) Microenvironmental Regulation in Autoimmunity and Cancer (3) Mobile DNA (7) Molecular Biology of Peptide Hormones (2) Molecular Cardiovascular Research (19) Molecular Pathways in Cortical Development (5) Molecular Physiology of Somatic Sensation (1) Myology (2) Neuroimmunology Laboratory (1) Non-coding RNAs and Mechanisms of Cytoplasmic Gene Regulation (4) Organoids (2) Pluripotent Stem Cells (11) Protein Production and Characterization (19) Proteome Dynamics (10) Proteomics (8) Proteomics and Metabolomics (4) Proteomics and Molecular Mechanisms of Neurodegenerative Diseases (41) Quantitative Developmental Biology (2) Quantitative Stem Cell Biology (2) RNA Biology and Posttranscriptional Regulation (9) Structural Biology of Membrane-Associated Processes (8) Systems Biology Imaging (2) Systems Biology of Gene Regulatory Elements (15) Transgenics (2) Translational Bioinformatics (3) Translational Cardiology and Functional Genomics (3) Translational Oncology of Solid Tumors (7) Translational Tumorimmunology (2) 73 Results: Active Filter: Akalin, Altuna Dr.Prigione, Alessandro Prof. Dr.Bioinformatics and Omics Data Science Sort: Result score Newest to oldest Oldest to newest August 01, 2006 / Comput Syst Bioinformatics Conf Predicting the binding affinity of MHC class II peptides F. Altiparmak A. Akalin H. Ferhatosmanoglu July 03, 2017 / Nucleic Acids Res The RNA workbench: best practices for RNA and high-throughput sequencing bioinformatics in Galaxy B.A. Grüning J. Fallmann D. Yusuf S. Will A. Erxleben F. Eggenhofer T. Houwaart B. Batut P. Videm A. Bagnacani M. Wolfien S.C. Lott Y. Hoogstrate W.R. Hess O. Wolkenhauer S. Hoffmann A. Akalin U. Ohler P.F. Stadler R. Backofen June 02, 2017 / Nucleic Acids Res RCAS: an RNA centric annotation system for transcriptome-wide regions of interest B. Uyar D. Yusuf R. Wurmus N. Rajewsky U. Ohler A. Akalin January 28, 2015 / Nucleic Acids Res DoRiNA 2.0-upgrading the doRiNA database of RNA interactions in post-transcriptional regulation K. Blin C. Dieterich R. Wurmus N. Rajewsky M. Landthaler A. Akalin February 18, 2014 / Front Cell Neurosci NanoCAGE analysis of the mouse olfactory epithelium identifies the expression of vomeronasal receptors and of proximal LINE elements G. Pascarella D. Lazarevic C. Plessy N. Bertin A. Akalin C. Vlachouli R. Simone G.J. Faulkner S. Zucchelli J. Kawai C.O. Daub Y. Hayashizaki B. Lenhard P. Carninci S. Gustincich March 20, 2014 / Nature Two independent transcription initiation codes overlap on vertebrate core promoters V. Haberle N. Li Y. Hadzhiev C. Plessy C. Previti C. Nepal J. Gehrig X. Dong A. Akalin A.M. Suzuki W.F.J. van IJcken O. Armant M. Ferg U. Strähle P. Carninci F. Müller B. Lenhard September 15, 2013 / Genes Dev Induction of sarcomas by mutant IDH2 C. Lu S. Venneti A. Akalin F. Fang P.S. Ward R.G. Dematteo A.M. Intlekofer C. Chen J. Ye M. Hameed K. Nafa N.P. Agaram J.R. Cross R. Khanin C.E. Mason J.H. Healey S.W. Lowe G.K. Schwartz A. Melnick C.B. Thompson November 01, 2013 / Genome Res Dynamic regulation of the transcription initiation landscape at single nucleotide resolution during vertebrate embryogenesis C. Nepal Y. Hadzhiev C. Previti V. Haberle N. Li H. Takahashi A.M.M. Suzuki Y. Sheng R.F. Abdelhamid S. Anand J. Gehrig A. Akalin C.E.M. Kockx A.A.J. van der Sloot W.F.J. van Ijcken O. Armant S. Rastegar C. Watson U. Strähle E. Stupka P. Carninci B. Lenhard F. Müller January 01, 2013 / BMC Bioinformatics An optimized algorithm for detecting and annotating regional differential methylation S. Li F.E. Garrett-Bakelman A. Akalin P. Zumbo R. Levine B.L. To I.D. Lewis A.L. Brown R.J. D'Andrea A. Melnick C.E. Mason October 03, 2012 / Genome Biol methylKit: a comprehensive R package for the analysis of genome-wide DNA methylation profiles A. Akalin M. Kormaksson S. Li F.E. Garrett-Bakelman M.E. Figueroa A. Melnick C.E. Mason Pagination Current page 1 Page 2 Page 3 Page 4 … Next page Next › Last page Last »
August 01, 2006 / Comput Syst Bioinformatics Conf Predicting the binding affinity of MHC class II peptides F. Altiparmak A. Akalin H. Ferhatosmanoglu
July 03, 2017 / Nucleic Acids Res The RNA workbench: best practices for RNA and high-throughput sequencing bioinformatics in Galaxy B.A. Grüning J. Fallmann D. Yusuf S. Will A. Erxleben F. Eggenhofer T. Houwaart B. Batut P. Videm A. Bagnacani M. Wolfien S.C. Lott Y. Hoogstrate W.R. Hess O. Wolkenhauer S. Hoffmann A. Akalin U. Ohler P.F. Stadler R. Backofen
June 02, 2017 / Nucleic Acids Res RCAS: an RNA centric annotation system for transcriptome-wide regions of interest B. Uyar D. Yusuf R. Wurmus N. Rajewsky U. Ohler A. Akalin
January 28, 2015 / Nucleic Acids Res DoRiNA 2.0-upgrading the doRiNA database of RNA interactions in post-transcriptional regulation K. Blin C. Dieterich R. Wurmus N. Rajewsky M. Landthaler A. Akalin
February 18, 2014 / Front Cell Neurosci NanoCAGE analysis of the mouse olfactory epithelium identifies the expression of vomeronasal receptors and of proximal LINE elements G. Pascarella D. Lazarevic C. Plessy N. Bertin A. Akalin C. Vlachouli R. Simone G.J. Faulkner S. Zucchelli J. Kawai C.O. Daub Y. Hayashizaki B. Lenhard P. Carninci S. Gustincich
March 20, 2014 / Nature Two independent transcription initiation codes overlap on vertebrate core promoters V. Haberle N. Li Y. Hadzhiev C. Plessy C. Previti C. Nepal J. Gehrig X. Dong A. Akalin A.M. Suzuki W.F.J. van IJcken O. Armant M. Ferg U. Strähle P. Carninci F. Müller B. Lenhard
September 15, 2013 / Genes Dev Induction of sarcomas by mutant IDH2 C. Lu S. Venneti A. Akalin F. Fang P.S. Ward R.G. Dematteo A.M. Intlekofer C. Chen J. Ye M. Hameed K. Nafa N.P. Agaram J.R. Cross R. Khanin C.E. Mason J.H. Healey S.W. Lowe G.K. Schwartz A. Melnick C.B. Thompson
November 01, 2013 / Genome Res Dynamic regulation of the transcription initiation landscape at single nucleotide resolution during vertebrate embryogenesis C. Nepal Y. Hadzhiev C. Previti V. Haberle N. Li H. Takahashi A.M.M. Suzuki Y. Sheng R.F. Abdelhamid S. Anand J. Gehrig A. Akalin C.E.M. Kockx A.A.J. van der Sloot W.F.J. van Ijcken O. Armant S. Rastegar C. Watson U. Strähle E. Stupka P. Carninci B. Lenhard F. Müller
January 01, 2013 / BMC Bioinformatics An optimized algorithm for detecting and annotating regional differential methylation S. Li F.E. Garrett-Bakelman A. Akalin P. Zumbo R. Levine B.L. To I.D. Lewis A.L. Brown R.J. D'Andrea A. Melnick C.E. Mason
October 03, 2012 / Genome Biol methylKit: a comprehensive R package for the analysis of genome-wide DNA methylation profiles A. Akalin M. Kormaksson S. Li F.E. Garrett-Bakelman M.E. Figueroa A. Melnick C.E. Mason