Scientific Publications Search Search Author Impact Factor Release Date Research Group Search Sort by RelevanceFrom A-ZAuthored onDate/Time RangeRelease date Order AscDesc Adami, Eleonora Dr. (1) Beule, Dieter Dr. (2) Birchmeier-Kohler, Carmen Prof. Dr. (1) Blachut, Susanne (1) Burkert, Christian Martin (1) Chekulaeva, Marina Dr. (1) Chen, Chia-Yu (1) Diecke, Sebastian Dr. (2) Franke, Vedran Dr. (1) Ghanbari, Mahsa Dr. (5) Gil, Marine (1) Gotthardt, Michael Prof. Dr. (2) Henssen, Anton Prof. Dr. med. (1) Hirsekorn, Antje (12) Hübner, Norbert Prof. Dr. (2) Hummel, Oliver (1) Junker, Jan Philipp Prof. Dr. (2) Kaufmann, Tom (1) Kempa, Stefan Dr. (1) Kirchner, Marieluise Dr. (1) Kühn, Ralf Dr. (1) Lacadie, Scott Allen Dr. (10) Landthaler, Markus Prof. Dr. (10) Lindberg, Eric Lars-Helge (1) Maatz, Henrike Dr. (1) Mastrobuoni, Guido Dr. (1) Merks, Anne Margarete Dr. (1) Mertins, Philipp Dr. (1) Mintcheva, Janita (1) Monti, Remo (3) Müller, Thomas Dr. (1) Müthel, Stefanie (1) Neuschulz, Anika (1) Obermayer-Wasserscheid, Benedikt Dr. (3) Ofenbauer, Andreas Dr. (1) Ohler, Uwe Prof. Dr. (138) Panakova, Daniela Dr. (1) Patone, Giannino Dr. (1) Pombo, Ana Prof. Dr. (1) Preibisch, Stephan Dr. (1) Rajewsky, Nikolaus Prof. Dr. (5) Rautenstrauch, Pia Josefine (2) Röefzaad, Claudia (1) Ruiz Orera, Jorge Dr. (1) Sander, Maike Prof. Dr. (1) Schwarz, Roland Dr. (2) Selbach, Matthias Prof. Dr. (9) Spanjaard, Bastiaan Dr. (1) Sprink, Thiemo Dr. (1) Streck, Adam Dr. (1) Tursun, Baris Dr. (2) Uyar, Bora Dr. (2) Villamil, Gabriel (1) Vucicevic, Dubravka (3) Woehler, Andrew Dr. (1) Wurmus, Ricardo (3) Zauber, Henrik Dr. (2) Zinzen, Robert Patrick Dr. (3) (-) Akalin, Altuna Dr. (9) (-) Wyler, Emanuel Dr. (3) 2016 (1) 2017 (4) 2018 (1) 2019 (3) 2020 (1) 2022 (2) Advanced Light Microscopy (1) Animal Phenotyping (1) Bioinformatics and Omics Data Science (73) Biology of Malignant Lymphomas (4) Biomedical Image Analysis (1) Cancer Genetics and Cellular Stress Responses (2) Cardiac MRI (4) Cellular Neurosciences (17) Computational methodologies and omic analytics (1) (-) Computational Regulatory Genomics (12) Developmental Biology / Signal Transduction (8) Developmental Neurobiology (1) Development and Function of Neural Circuits (1) Epigenetic Regulation and Chromatin Architecture (4) Experimental Ultrahigh-Field MR (20) Genetics and Genomics of Cardiovascular Diseases (6) Genetics of Metabolic and Reproductive Disorders (19) Genome Diversification & Integrity (2) Genome Engineering & Disease Models (2) Genomics (3) Immune Regulation and Cancer (3) Integrative Vascular Biology (1) Magnetic Resonance (20) Mathematical Modelling of Cellular Processes (1) Microenvironmental Regulation in Autoimmunity and Cancer (2) Mobile DNA (1) Molecular Cardiovascular Research (1) Myology (3) Neuroimmunology Laboratory (1) Non-coding RNAs and Mechanisms of Cytoplasmic Gene Regulation (5) Organoids (1) Out-patient Clinic for Neuroimmunology (1) Pluripotent Stem Cells (4) Protein Production and Characterization (1) Proteome Dynamics (11) Proteomics (6) Proteomics and Metabolomics (4) Proteomics and Molecular Mechanisms of Neurodegenerative Diseases (4) Psychoneuroimmunology (4) Quantitative Developmental Biology (1) RNA Biology and Posttranscriptional Regulation (55) Structural Biology of Membrane-Associated Processes (4) Systems Biology Imaging (3) Systems Biology of Gene Regulatory Elements (13) Transgenics (2) Translational Bioinformatics (10) Translational Tumorimmunology (2) 12 Results: Active Filter: Akalin, Altuna Dr.Wyler, Emanuel Dr.Computational Regulatory Genomics Sort: Result score Newest to oldest Oldest to newest September 10, 2018 / Dev Cell FACT sets a barrier for cell fate reprogramming in Caenorhabditis elegans and human cells E. Kolundzic A. Ofenbauer S.I. Bulut B. Uyar G. Baytek A. Sommermeier S. Seelk M. He A. Hirsekorn D. Vucicevic A. Akalin S. Diecke S.A. Lacadie B. Tursun January 03, 2017 / BMC Bioinformatics JACUSA: site-specific identification of RNA editing events from replicate sequencing data M. Piechotta E. Wyler U. Ohler M. Landthaler C. Dieterich July 13, 2020 / Nat Commun Deep learning for genomics using Janggu W. Kopp R. Monti A. Tamburrini U. Ohler A. Akalin January 25, 2019 / Nucleic Acids Res Deciphering human ribonucleoprotein regulatory networks N. Mukherjee H.H. Wessels S. Lebedeva M. Sajek M. Ghanbari A. Garzia A. Munteanu D. Yusuf T. Farazi J.I. Hoell K.M. Akat A. Akalin T. Tuschl U. Ohler July 03, 2017 / Nucleic Acids Res The RNA workbench: best practices for RNA and high-throughput sequencing bioinformatics in Galaxy B.A. Grüning J. Fallmann D. Yusuf S. Will A. Erxleben F. Eggenhofer T. Houwaart B. Batut P. Videm A. Bagnacani M. Wolfien S.C. Lott Y. Hoogstrate W.R. Hess O. Wolkenhauer S. Hoffmann A. Akalin U. Ohler P.F. Stadler R. Backofen September 19, 2017 / Nat Commun RNA localization is a key determinant of neurite-enriched proteome A. Zappulo D. van den Bruck C. Ciolli Mattioli V. Franke K. Imami E. McShane M. Moreno-Estelles L. Calviello A. Filipchyk E. Peguero-Sanchez T. Müller A. Woehler C. Birchmeier E. Merino N. Rajewsky U. Ohler E.O. Mazzoni M. Selbach A. Akalin M. Chekulaeva June 02, 2017 / Nucleic Acids Res RCAS: an RNA centric annotation system for transcriptome-wide regions of interest B. Uyar D. Yusuf R. Wurmus N. Rajewsky U. Ohler A. Akalin June 27, 2019 / Cell The translational landscape of the human heart S. van Heesch F. Witte V. Schneider-Lunitz J.F. Schulz E. Adami A. Faber M. Kirchner H. Maatz S. Blachut C.L. Sandmann M. Kanda C.L. Worth S. Schafer L. Calviello R. Merriott G. Patone O. Hummel E. Wyler B. Obermayer M. Mücke E.L. Lindberg F. Trnka S. Memczak M. Schilling L.E. Felkin P.J.R. Barton N.M. Quaife K. Vanezis S. Diecke M. Mukai N. Mah S.J. Oh A. Kurtz C. Schramm D. Schwinge M. Sebode M. Harakalova F.W. Asselbergs A. Vink R.A. de Weger S. Viswanathan A.A. Widjaja A. Gärtner-Rommel H. Milting C. Dos Remedios C. Knosalla P. Mertins M. Landthaler M. Vingron W.A. Linke J.G. Seidman C.E. Seidman N. Rajewsky U. Ohler S.A. Cook N. Hubner February 01, 2016 / Nat Methods Detecting actively translated open reading frames in ribosome profiling data L. Calviello N. Mukherjee E. Wyler H. Zauber A. Hirsekorn M. Selbach M. Landthaler B. Obermayer U. Ohler January 13, 2022 / Cell Genom Single-cell-resolved dynamics of chromatin architecture delineate cell and regulatory states in zebrafish embryos A.C. McGarvey W. Kopp D. Vučićević K. Mattonet R. Kempfer A. Hirsekorn I. Bilić M. Gil A. Trinks A.M. Merks D. Panáková A. Pombo A. Akalin J.P. Junker D.Y.R. Stainier D. Garfield U. Ohler S.A. Lacadie Pagination Current page 1 Page 2 Next page Next › Last page Last »
September 10, 2018 / Dev Cell FACT sets a barrier for cell fate reprogramming in Caenorhabditis elegans and human cells E. Kolundzic A. Ofenbauer S.I. Bulut B. Uyar G. Baytek A. Sommermeier S. Seelk M. He A. Hirsekorn D. Vucicevic A. Akalin S. Diecke S.A. Lacadie B. Tursun
January 03, 2017 / BMC Bioinformatics JACUSA: site-specific identification of RNA editing events from replicate sequencing data M. Piechotta E. Wyler U. Ohler M. Landthaler C. Dieterich
July 13, 2020 / Nat Commun Deep learning for genomics using Janggu W. Kopp R. Monti A. Tamburrini U. Ohler A. Akalin
January 25, 2019 / Nucleic Acids Res Deciphering human ribonucleoprotein regulatory networks N. Mukherjee H.H. Wessels S. Lebedeva M. Sajek M. Ghanbari A. Garzia A. Munteanu D. Yusuf T. Farazi J.I. Hoell K.M. Akat A. Akalin T. Tuschl U. Ohler
July 03, 2017 / Nucleic Acids Res The RNA workbench: best practices for RNA and high-throughput sequencing bioinformatics in Galaxy B.A. Grüning J. Fallmann D. Yusuf S. Will A. Erxleben F. Eggenhofer T. Houwaart B. Batut P. Videm A. Bagnacani M. Wolfien S.C. Lott Y. Hoogstrate W.R. Hess O. Wolkenhauer S. Hoffmann A. Akalin U. Ohler P.F. Stadler R. Backofen
September 19, 2017 / Nat Commun RNA localization is a key determinant of neurite-enriched proteome A. Zappulo D. van den Bruck C. Ciolli Mattioli V. Franke K. Imami E. McShane M. Moreno-Estelles L. Calviello A. Filipchyk E. Peguero-Sanchez T. Müller A. Woehler C. Birchmeier E. Merino N. Rajewsky U. Ohler E.O. Mazzoni M. Selbach A. Akalin M. Chekulaeva
June 02, 2017 / Nucleic Acids Res RCAS: an RNA centric annotation system for transcriptome-wide regions of interest B. Uyar D. Yusuf R. Wurmus N. Rajewsky U. Ohler A. Akalin
June 27, 2019 / Cell The translational landscape of the human heart S. van Heesch F. Witte V. Schneider-Lunitz J.F. Schulz E. Adami A. Faber M. Kirchner H. Maatz S. Blachut C.L. Sandmann M. Kanda C.L. Worth S. Schafer L. Calviello R. Merriott G. Patone O. Hummel E. Wyler B. Obermayer M. Mücke E.L. Lindberg F. Trnka S. Memczak M. Schilling L.E. Felkin P.J.R. Barton N.M. Quaife K. Vanezis S. Diecke M. Mukai N. Mah S.J. Oh A. Kurtz C. Schramm D. Schwinge M. Sebode M. Harakalova F.W. Asselbergs A. Vink R.A. de Weger S. Viswanathan A.A. Widjaja A. Gärtner-Rommel H. Milting C. Dos Remedios C. Knosalla P. Mertins M. Landthaler M. Vingron W.A. Linke J.G. Seidman C.E. Seidman N. Rajewsky U. Ohler S.A. Cook N. Hubner
February 01, 2016 / Nat Methods Detecting actively translated open reading frames in ribosome profiling data L. Calviello N. Mukherjee E. Wyler H. Zauber A. Hirsekorn M. Selbach M. Landthaler B. Obermayer U. Ohler
January 13, 2022 / Cell Genom Single-cell-resolved dynamics of chromatin architecture delineate cell and regulatory states in zebrafish embryos A.C. McGarvey W. Kopp D. Vučićević K. Mattonet R. Kempfer A. Hirsekorn I. Bilić M. Gil A. Trinks A.M. Merks D. Panáková A. Pombo A. Akalin J.P. Junker D.Y.R. Stainier D. Garfield U. Ohler S.A. Lacadie