Scientific Publications Search Search Author Release Date Research Group Search Sort by RelevanceFrom A-ZAuthored onDate/Time RangeRelease date Order AscDesc Akalin, Altuna Dr. (73) Altmueller, Janine Dr.med. (1) Annibale, Paolo Dr. (1) Bahry, Ella Dr. (1) Barke, Niclas (1) Berruezo Llacuna, Maria (1) Birchmeier-Kohler, Carmen Prof. Dr. (3) Blume, Alexander Dr. (6) Borodina, Tatiana Dr. (1) Carvalho, Silvia Filipa (1) Chekulaeva, Marina Dr. (2) Chen, Wei Prof. Dr. (1) Chu, Van Trung Dr. (1) Costanza, Mariantonia Dr. (2) Daumke, Oliver Prof. Dr. (4) Del Giudice, Simone (1) Deter, Aylina (1) Diecke, Sebastian Dr. (2) Di Virgilio, Michela Prof. Dr. (2) Driesner, Madlen (1) Escobar Fernandez, Helena Dr. (1) Faxel, Miriam (1) Freimuth, Jonas (1) Gerhardt, Holger Prof. Dr. (1) Ghanbari, Mahsa Dr. (1) Gil, Marine (1) Graf, Robin Dr. (1) Harabula, Izabela-Cezara (1) Haucke, Volker Professor (1) Herzog, Margareta (1) Hinz, Michael Dr. (2) Hirsekorn, Antje (4) Höpken, Uta Elisabeth PD Dr. (2) Hübner, Norbert Prof. Dr. (1) Irastorza Azcarate, Ibai Dr. (1) Janz, Martin Dr. (3) Junker, Jan Philipp Prof. Dr. (1) Keller, Lisa (1) Kempa, Stefan Dr. (1) Kirchner, Marieluise Dr. (1) Kocks, Christine Dr. (2) Kolesnichenko, Marina Dr. (3) Kühn, Ralf Dr. (1) Kukalev, Alexander Dr. (2) Lacadie, Scott Allen Dr. (3) Landthaler, Markus Prof. Dr. (5) Lohse, Martin Prof. Dr. (1) Lusatis, Simone (1) Marg, Andreas Dr. (1) Mathas, Stephan Dr. (3) Meijer, Mandy Dr. (1) Merks, Anne Margarete Dr. (1) Mertins, Philipp Dr. (1) Monti, Remo (1) Müller, Thomas Dr. (1) Müthel, Stefanie (3) Ofenbauer, Andreas Dr. (1) Ohler, Uwe Prof. Dr. (10) Panakova, Daniela Dr. (1) Patarcic, Inga Dr. (1) Patone, Giannino Dr. (1) Pombo, Ana Prof. Dr. (3) Popp, Oliver Dr. (1) Preibisch, Stephan Dr. (1) Prigione, Alessandro Prof. Dr. (1) Quedenau, Claudia (1) Rajewsky, Klaus Prof. Dr. (2) Rajewsky, Nikolaus Prof. Dr. (8) Rathgeber, Anja (1) Rehm, Armin Dr. (1) Roske, Yvette Dr. (1) Rrustemi, Trendelina (1) Rudolph, Ina-Maria Dr. (1) Scheidereit, Claus Prof. Dr. (4) Schmidt-Ullrich, Ruth Dr. (1) Schmitt, Clemens Prof. Dr. (1) Selbach, Matthias Prof. Dr. (5) Serebreni, Leonid Dr. (1) Siffrin, Volker (1) Spuler, Simone Prof. (2) Szabo, Dominik (1) Thieme, Christoph Dr. (1) Tursun, Baris Dr. (4) Uyar, Bora Dr. (15) Vucicevic, Dubravka (2) Willimsky, Gerald Dr. (1) Willnow, Thomas Prof. Dr. (1) Winick-Ng, Warren Dr. (1) Woehler, Andrew Dr. (3) Wurmus, Ricardo (9) Wyler, Emanuel Dr. (4) Zampieri, Niccolo Dr. (1) Zauber, Henrik Dr. (1) Zea Redondo, Luna (1) (-) Franke, Vedran Dr. (22) 2015 (1) 2017 (2) 2018 (1) 2019 (4) 2020 (2) 2021 (5) 2022 (4) 2023 (4) AG Müller/Dechend (ECRC) (266) Animal Phenotyping (9) (-) Bioinformatics and Omics Data Science (23) Biology of Malignant Lymphomas (10) Cardiac MRI (1) Clinical Research Unit (4) Computational Regulatory Genomics (1) Developmental Biology / Signal Transduction (3) Epigenetic Regulation and Chromatin Architecture (2) Genetics and Genomics of Cardiovascular Diseases (10) Genomics (2) Host-microbiome factors in cardiovascular disease (7) Hypertension-caused End-Organ Damage (266) Hypertension-Mediated End-Organ Damage (266) Immune Regulation and Cancer (2) Mathematical Cell Physiology (2) Microenvironmental Regulation in Autoimmunity and Cancer (1) Mobile DNA (2) Molecular Biology of Peptide Hormones (24) Myology (2) Neuroimmunology Laboratory (1) Non-coding RNAs and Mechanisms of Cytoplasmic Gene Regulation (4) Out-patient Clinic for Neuroimmunology (1) Proteome Dynamics (5) Proteomics and Metabolomics (5) RNA Biology and Posttranscriptional Regulation (4) Structural Biology of Membrane-Associated Processes (5) Synaptic Transmission and Plasticity (1) Systems Biology Imaging (2) Systems Biology of Gene Regulatory Elements (5) Translational Bioinformatics (3) Translational Oncology of Solid Tumors (1) Translational Tumorimmunology (2) 23 Results: Active Filter: Franke, Vedran Dr.Bioinformatics and Omics Data Science Sort: Result score Newest to oldest Oldest to newest April 01, 2015 / Bioinformatics genomation: a toolkit to summarize, annotate and visualize genomic intervals A. Akalin V. Franke K. Vlahoviček C.E. Mason D. Schübeler November 30, 2023 / Nat Commun The SPOC proteins DIDO3 and PHF3 co-regulate gene expression and neuronal differentiation J. Benedum V. Franke L.M. Appel L. Walch M. Bruno R. Schneeweiss J. Gruber H. Oberndorfer E. Frank X. Strobl A. Polyansky B. Zagrovic A. Akalin D. Slade December 11, 2020 / Nat Commun Single-nucleus transcriptomics reveals functional compartmentalization in syncytial skeletal muscle cells M. Kim V. Franke B. Brandt E.D. Lowenstein V. Schöwel S. Spuler A. Akalin C. Birchmeier September 01, 2020 / Nat Chem Biol Single-molecule analysis reveals agonist-specific dimer formation of µ-opioid receptors J. Möller A. Isbilir T. Sungkaworn B. Osberg C. Karathanasis V. Sunkara E.O. Grushevskyi A. Bock P. Annibale M. Heilemann C. Schütte M.J. Lohse October 31, 2017 / Genome Biol Widespread activation of antisense transcription of the host genome during herpes simplex virus 1 infection E. Wyler J. Menegatti V. Franke C. Kocks A. Boltengagen T. Hennig K. Theil A. Rutkowski C. Ferrai L. Baer L. Kermas C. Friedel N. Rajewsky A. Akalin L. Dölken F. Grässer M. Landthaler October 25, 2019 / Nat Commun Single-cell RNA-sequencing of herpes simplex virus 1-infected cells connects NRF2 activation to an antiviral program E. Wyler V. Franke J. Menegatti C. Kocks A. Boltengagen S. Praktiknjo B. Walch-Rückheim J. Bosse N. Rajewsky F. Grässer A. Akalin M. Landthaler March 19, 2021 / iScience Transcriptomic profiling of SARS-CoV-2 infected human cell lines identifies HSP90 as target for COVID-19 therapy E. Wyler K. Mösbauer V. Franke A. Diag L.T. Gottula R. Arsiè F. Klironomos D. Koppstein K. Hönzke S. Ayoub C. Buccitelli K. Hoffmann A. Richter I. Legnini A. Ivanov T. Mari S. Del Giudice J. Papies S. Praktiknjo T.F. Meyer M.A. Müller D. Niemeyer A. Hocke M. Selbach A. Akalin N. Rajewsky C. Drosten M. Landthaler December 06, 2021 / Genome Biol The SEQC2 epigenomics quality control (EpiQC) study J. Foox J. Nordlund C. Lalancette T. Gong M. Lacey S. Lent B.W. Langhorst V.K.C. Ponnaluri L. Williams K.R. Padmanabhan R. Cavalcante A. Lundmark D. Butler C. Mozsary J. Gurvitch J.M. Greally M. Suzuki M. Menor M. Nasu A. Alonso C. Sheridan A. Scherer S. Bruinsma G. Golda A. Muszynska P.P. Łabaj M.A. Campbell F. Wos A. Raine U. Liljedahl T. Axelsson C. Wang Z. Chen Z. Yang J. Li X. Yang H. Wang A. Melnick S. Guo A. Blume V. Franke I. Ibanez de Caceres C. Rodriguez-Antolin R. Rosas J.W. Davis J. Ishii D.B. Megherbi W. Xiao W. Liao J. Xu H. Hong B. Ning W. Tong A. Akalin Y. Wang Y. Deng C.E. Mason November 07, 2023 / Nat Commun Transcriptional reprogramming by mutated IRF4 in lymphoma N. Schleussner P. Cauchy V. Franke M. Giefing O. Fornes N. Vankadari S.A. Assi M. Costanza M.A. Weniger A. Akalin I. Anagnostopoulos T. Bukur M.G. Casarotto F. Damm O. Daumke B. Edginton-White J.C.M. Gebhardt M. Grau S. Grunwald M.L. Hansmann S. Hartmann L. Huber E. Kärgel S. Lusatis D. Noerenberg N. Obier U. Pannicke A. Fischer A. Reisser A. Rosenwald K. Schwarz S. Sundararaj A. Weilemann W. Winkler W. Xu G. Lenz K. Rajewsky W.W. Wasserman P.N. Cockerill C. Scheidereit R. Siebert R. Küppers R. Grosschedl M. Janz C. Bonifer S. Mathas November 15, 2022 / Cancers Multi-omics alleviates the limitations of panel sequencing for cancer drug response prediction A. Baranovskii I.B. Gündüz V. Franke B. Uyar A. Akalin Pagination Current page 1 Page 2 Page 3 Next page Next › Last page Last »
April 01, 2015 / Bioinformatics genomation: a toolkit to summarize, annotate and visualize genomic intervals A. Akalin V. Franke K. Vlahoviček C.E. Mason D. Schübeler
November 30, 2023 / Nat Commun The SPOC proteins DIDO3 and PHF3 co-regulate gene expression and neuronal differentiation J. Benedum V. Franke L.M. Appel L. Walch M. Bruno R. Schneeweiss J. Gruber H. Oberndorfer E. Frank X. Strobl A. Polyansky B. Zagrovic A. Akalin D. Slade
December 11, 2020 / Nat Commun Single-nucleus transcriptomics reveals functional compartmentalization in syncytial skeletal muscle cells M. Kim V. Franke B. Brandt E.D. Lowenstein V. Schöwel S. Spuler A. Akalin C. Birchmeier
September 01, 2020 / Nat Chem Biol Single-molecule analysis reveals agonist-specific dimer formation of µ-opioid receptors J. Möller A. Isbilir T. Sungkaworn B. Osberg C. Karathanasis V. Sunkara E.O. Grushevskyi A. Bock P. Annibale M. Heilemann C. Schütte M.J. Lohse
October 31, 2017 / Genome Biol Widespread activation of antisense transcription of the host genome during herpes simplex virus 1 infection E. Wyler J. Menegatti V. Franke C. Kocks A. Boltengagen T. Hennig K. Theil A. Rutkowski C. Ferrai L. Baer L. Kermas C. Friedel N. Rajewsky A. Akalin L. Dölken F. Grässer M. Landthaler
October 25, 2019 / Nat Commun Single-cell RNA-sequencing of herpes simplex virus 1-infected cells connects NRF2 activation to an antiviral program E. Wyler V. Franke J. Menegatti C. Kocks A. Boltengagen S. Praktiknjo B. Walch-Rückheim J. Bosse N. Rajewsky F. Grässer A. Akalin M. Landthaler
March 19, 2021 / iScience Transcriptomic profiling of SARS-CoV-2 infected human cell lines identifies HSP90 as target for COVID-19 therapy E. Wyler K. Mösbauer V. Franke A. Diag L.T. Gottula R. Arsiè F. Klironomos D. Koppstein K. Hönzke S. Ayoub C. Buccitelli K. Hoffmann A. Richter I. Legnini A. Ivanov T. Mari S. Del Giudice J. Papies S. Praktiknjo T.F. Meyer M.A. Müller D. Niemeyer A. Hocke M. Selbach A. Akalin N. Rajewsky C. Drosten M. Landthaler
December 06, 2021 / Genome Biol The SEQC2 epigenomics quality control (EpiQC) study J. Foox J. Nordlund C. Lalancette T. Gong M. Lacey S. Lent B.W. Langhorst V.K.C. Ponnaluri L. Williams K.R. Padmanabhan R. Cavalcante A. Lundmark D. Butler C. Mozsary J. Gurvitch J.M. Greally M. Suzuki M. Menor M. Nasu A. Alonso C. Sheridan A. Scherer S. Bruinsma G. Golda A. Muszynska P.P. Łabaj M.A. Campbell F. Wos A. Raine U. Liljedahl T. Axelsson C. Wang Z. Chen Z. Yang J. Li X. Yang H. Wang A. Melnick S. Guo A. Blume V. Franke I. Ibanez de Caceres C. Rodriguez-Antolin R. Rosas J.W. Davis J. Ishii D.B. Megherbi W. Xiao W. Liao J. Xu H. Hong B. Ning W. Tong A. Akalin Y. Wang Y. Deng C.E. Mason
November 07, 2023 / Nat Commun Transcriptional reprogramming by mutated IRF4 in lymphoma N. Schleussner P. Cauchy V. Franke M. Giefing O. Fornes N. Vankadari S.A. Assi M. Costanza M.A. Weniger A. Akalin I. Anagnostopoulos T. Bukur M.G. Casarotto F. Damm O. Daumke B. Edginton-White J.C.M. Gebhardt M. Grau S. Grunwald M.L. Hansmann S. Hartmann L. Huber E. Kärgel S. Lusatis D. Noerenberg N. Obier U. Pannicke A. Fischer A. Reisser A. Rosenwald K. Schwarz S. Sundararaj A. Weilemann W. Winkler W. Xu G. Lenz K. Rajewsky W.W. Wasserman P.N. Cockerill C. Scheidereit R. Siebert R. Küppers R. Grosschedl M. Janz C. Bonifer S. Mathas
November 15, 2022 / Cancers Multi-omics alleviates the limitations of panel sequencing for cancer drug response prediction A. Baranovskii I.B. Gündüz V. Franke B. Uyar A. Akalin