Scientific Publications Search Search Author Release Date Research Group Search Sort by RelevanceFrom A-ZAuthored onDate/Time RangeRelease date Order AscDesc Akalin, Altuna Dr. (73) Altmueller, Janine Dr.med. (1) Annibale, Paolo Dr. (1) Bahry, Ella Dr. (1) Barke, Niclas (1) Berruezo Llacuna, Maria (1) Birchmeier-Kohler, Carmen Prof. Dr. (3) Blume, Alexander Dr. (6) Borodina, Tatiana Dr. (1) Carvalho, Silvia Filipa (1) Chekulaeva, Marina Dr. (2) Chen, Wei Prof. Dr. (1) Chu, Van Trung Dr. (1) Costanza, Mariantonia Dr. (2) Daumke, Oliver Prof. Dr. (4) Del Giudice, Simone (1) Deter, Aylina (1) Diecke, Sebastian Dr. (2) Di Virgilio, Michela Prof. Dr. (2) Driesner, Madlen (1) Escobar Fernandez, Helena Dr. (1) Faxel, Miriam (1) Freimuth, Jonas (1) Gerhardt, Holger Prof. Dr. (1) Ghanbari, Mahsa Dr. (1) Gil, Marine (1) Graf, Robin Dr. (1) Harabula, Izabela-Cezara (1) Haucke, Volker Professor (1) Herzog, Margareta (1) Hinz, Michael Dr. (2) Hirsekorn, Antje (4) Höpken, Uta Elisabeth PD Dr. (2) Hübner, Norbert Prof. Dr. (1) Irastorza Azcarate, Ibai Dr. (1) Janz, Martin Dr. (3) Junker, Jan Philipp Prof. Dr. (1) Keller, Lisa (1) Kempa, Stefan Dr. (1) Kirchner, Marieluise Dr. (1) Kocks, Christine Dr. (2) Kolesnichenko, Marina Dr. (3) Kühn, Ralf Dr. (1) Kukalev, Alexander Dr. (2) Lacadie, Scott Allen Dr. (3) Landthaler, Markus Prof. Dr. (5) Lohse, Martin Prof. Dr. (1) Lusatis, Simone (1) Marg, Andreas Dr. (1) Mathas, Stephan Dr. (3) Meijer, Mandy Dr. (1) Merks, Anne Margarete Dr. (1) Mertins, Philipp Dr. (1) Monti, Remo (1) Müller, Thomas Dr. (1) Müthel, Stefanie (3) Ofenbauer, Andreas Dr. (1) Ohler, Uwe Prof. Dr. (10) Panakova, Daniela Dr. (1) Patarcic, Inga Dr. (1) Patone, Giannino Dr. (1) Pombo, Ana Prof. Dr. (3) Popp, Oliver Dr. (1) Preibisch, Stephan Dr. (1) Prigione, Alessandro Prof. Dr. (1) Quedenau, Claudia (1) Rajewsky, Klaus Prof. Dr. (2) Rajewsky, Nikolaus Prof. Dr. (8) Rathgeber, Anja (1) Rehm, Armin Dr. (1) Roske, Yvette Dr. (1) Rrustemi, Trendelina (1) Rudolph, Ina-Maria Dr. (1) Scheidereit, Claus Prof. Dr. (4) Schmidt-Ullrich, Ruth Dr. (1) Schmitt, Clemens Prof. Dr. (1) Selbach, Matthias Prof. Dr. (5) Serebreni, Leonid Dr. (1) Siffrin, Volker (1) Spuler, Simone Prof. (2) Szabo, Dominik (1) Thieme, Christoph Dr. (1) Tursun, Baris Dr. (4) Uyar, Bora Dr. (15) Vucicevic, Dubravka (2) Willimsky, Gerald Dr. (1) Willnow, Thomas Prof. Dr. (1) Winick-Ng, Warren Dr. (1) Woehler, Andrew Dr. (3) Wurmus, Ricardo (9) Wyler, Emanuel Dr. (4) Zampieri, Niccolo Dr. (1) Zauber, Henrik Dr. (1) Zea Redondo, Luna (1) (-) Franke, Vedran Dr. (22) 2015 (1) 2017 (2) 2018 (1) 2019 (4) 2020 (2) 2021 (5) 2022 (4) 2023 (4) AG Müller/Dechend (ECRC) (266) Animal Phenotyping (8) (-) Bioinformatics and Omics Data Science (23) Biology of Malignant Lymphomas (3) Cardiac MRI (1) Clinical Research Unit (4) Computational Regulatory Genomics (1) Developmental Biology / Signal Transduction (3) Epigenetic Regulation and Chromatin Architecture (2) Genetics and Genomics of Cardiovascular Diseases (9) Genomics (2) Host-microbiome factors in cardiovascular disease (7) Hypertension-caused End-Organ Damage (266) Hypertension-Mediated End-Organ Damage (266) Immune Regulation and Cancer (1) Mathematical Cell Physiology (2) Microenvironmental Regulation in Autoimmunity and Cancer (1) Mobile DNA (2) Molecular Biology of Peptide Hormones (25) Myology (2) Neuroimmunology Laboratory (1) Non-coding RNAs and Mechanisms of Cytoplasmic Gene Regulation (4) Out-patient Clinic for Neuroimmunology (1) Proteome Dynamics (5) Proteomics and Metabolomics (5) RNA Biology and Posttranscriptional Regulation (4) Structural Biology of Membrane-Associated Processes (5) Synaptic Transmission and Plasticity (1) Systems Biology Imaging (2) Systems Biology of Gene Regulatory Elements (5) Translational Bioinformatics (2) Translational Tumorimmunology (2) 23 Results: Active Filter: Franke, Vedran Dr.Bioinformatics and Omics Data Science Sort: Result score Newest to oldest Oldest to newest October 31, 2017 / Genome Biol Widespread activation of antisense transcription of the host genome during herpes simplex virus 1 infection E. Wyler J. Menegatti V. Franke C. Kocks A. Boltengagen T. Hennig K. Theil A. Rutkowski C. Ferrai L. Baer L. Kermas C. Friedel N. Rajewsky A. Akalin L. Dölken F. Grässer M. Landthaler March 19, 2021 / iScience Transcriptomic profiling of SARS-CoV-2 infected human cell lines identifies HSP90 as target for COVID-19 therapy E. Wyler K. Mösbauer V. Franke A. Diag L.T. Gottula R. Arsiè F. Klironomos D. Koppstein K. Hönzke S. Ayoub C. Buccitelli K. Hoffmann A. Richter I. Legnini A. Ivanov T. Mari S. Del Giudice J. Papies S. Praktiknjo T.F. Meyer M.A. Müller D. Niemeyer A. Hocke M. Selbach A. Akalin N. Rajewsky C. Drosten M. Landthaler April 01, 2015 / Bioinformatics genomation: a toolkit to summarize, annotate and visualize genomic intervals A. Akalin V. Franke K. Vlahoviček C.E. Mason D. Schübeler September 19, 2017 / Nat Commun RNA localization is a key determinant of neurite-enriched proteome A. Zappulo D. van den Bruck C. Ciolli Mattioli V. Franke K. Imami E. McShane M. Moreno-Estelles L. Calviello A. Filipchyk E. Peguero-Sanchez T. Müller A. Woehler C. Birchmeier E. Merino N. Rajewsky U. Ohler E.O. Mazzoni M. Selbach A. Akalin M. Chekulaeva September 01, 2020 / Nat Chem Biol Single-molecule analysis reveals agonist-specific dimer formation of µ-opioid receptors J. Möller A. Isbilir T. Sungkaworn B. Osberg C. Karathanasis V. Sunkara E.O. Grushevskyi A. Bock P. Annibale M. Heilemann C. Schütte M.J. Lohse October 25, 2019 / Nat Commun Single-cell RNA-sequencing of herpes simplex virus 1-infected cells connects NRF2 activation to an antiviral program E. Wyler V. Franke J. Menegatti C. Kocks A. Boltengagen S. Praktiknjo B. Walch-Rückheim J. Bosse N. Rajewsky F. Grässer A. Akalin M. Landthaler June 20, 2019 / Nucleic Acids Res HOT or not: examining the basis of high-occupancy target regions K. Wreczycka V. Franke B. Uyar R. Wurmus S. Bulut B. Tursun A. Akalin March 18, 2019 / Nucleic Acids Res Alternative 3' UTRs direct localization of functionally diverse protein isoforms in neuronal compartments C. Ciolli Mattioli A. Rom V. Franke K. Imami G. Arrey M. Terne A. Woehler A. Akalin I. Ulitsky M. Chekulaeva March 28, 2019 / Blood Autocrine LTA signaling drives NF-κB and JAK-STAT activity and myeloid gene expression in Hodgkin lymphoma L. von Hoff E. Kärgel V. Franke E. McShane K.W. Schulz-Beiss G. Patone N. Schleussner M. Kolesnichenko N. Hübner O. Daumke M. Selbach A. Akalin S. Mathas C. Scheidereit December 01, 2018 / GigaScience PiGx: reproducible genomics analysis pipelines with GNU Guix R. Wurmus B. Uyar B. Osberg V. Franke A. Gosdschan K. Wreczycka J. Ronen A. Akalin Pagination Current page 1 Page 2 Page 3 Next page Next › Last page Last »
October 31, 2017 / Genome Biol Widespread activation of antisense transcription of the host genome during herpes simplex virus 1 infection E. Wyler J. Menegatti V. Franke C. Kocks A. Boltengagen T. Hennig K. Theil A. Rutkowski C. Ferrai L. Baer L. Kermas C. Friedel N. Rajewsky A. Akalin L. Dölken F. Grässer M. Landthaler
March 19, 2021 / iScience Transcriptomic profiling of SARS-CoV-2 infected human cell lines identifies HSP90 as target for COVID-19 therapy E. Wyler K. Mösbauer V. Franke A. Diag L.T. Gottula R. Arsiè F. Klironomos D. Koppstein K. Hönzke S. Ayoub C. Buccitelli K. Hoffmann A. Richter I. Legnini A. Ivanov T. Mari S. Del Giudice J. Papies S. Praktiknjo T.F. Meyer M.A. Müller D. Niemeyer A. Hocke M. Selbach A. Akalin N. Rajewsky C. Drosten M. Landthaler
April 01, 2015 / Bioinformatics genomation: a toolkit to summarize, annotate and visualize genomic intervals A. Akalin V. Franke K. Vlahoviček C.E. Mason D. Schübeler
September 19, 2017 / Nat Commun RNA localization is a key determinant of neurite-enriched proteome A. Zappulo D. van den Bruck C. Ciolli Mattioli V. Franke K. Imami E. McShane M. Moreno-Estelles L. Calviello A. Filipchyk E. Peguero-Sanchez T. Müller A. Woehler C. Birchmeier E. Merino N. Rajewsky U. Ohler E.O. Mazzoni M. Selbach A. Akalin M. Chekulaeva
September 01, 2020 / Nat Chem Biol Single-molecule analysis reveals agonist-specific dimer formation of µ-opioid receptors J. Möller A. Isbilir T. Sungkaworn B. Osberg C. Karathanasis V. Sunkara E.O. Grushevskyi A. Bock P. Annibale M. Heilemann C. Schütte M.J. Lohse
October 25, 2019 / Nat Commun Single-cell RNA-sequencing of herpes simplex virus 1-infected cells connects NRF2 activation to an antiviral program E. Wyler V. Franke J. Menegatti C. Kocks A. Boltengagen S. Praktiknjo B. Walch-Rückheim J. Bosse N. Rajewsky F. Grässer A. Akalin M. Landthaler
June 20, 2019 / Nucleic Acids Res HOT or not: examining the basis of high-occupancy target regions K. Wreczycka V. Franke B. Uyar R. Wurmus S. Bulut B. Tursun A. Akalin
March 18, 2019 / Nucleic Acids Res Alternative 3' UTRs direct localization of functionally diverse protein isoforms in neuronal compartments C. Ciolli Mattioli A. Rom V. Franke K. Imami G. Arrey M. Terne A. Woehler A. Akalin I. Ulitsky M. Chekulaeva
March 28, 2019 / Blood Autocrine LTA signaling drives NF-κB and JAK-STAT activity and myeloid gene expression in Hodgkin lymphoma L. von Hoff E. Kärgel V. Franke E. McShane K.W. Schulz-Beiss G. Patone N. Schleussner M. Kolesnichenko N. Hübner O. Daumke M. Selbach A. Akalin S. Mathas C. Scheidereit
December 01, 2018 / GigaScience PiGx: reproducible genomics analysis pipelines with GNU Guix R. Wurmus B. Uyar B. Osberg V. Franke A. Gosdschan K. Wreczycka J. Ronen A. Akalin