Scientific Publications Search Search Author Impact Factor Release Date Research Group Search Sort by RelevanceFrom A-ZAuthored onDate/Time RangeRelease date Order AscDesc Akalin, Altuna Dr. (73) Altmueller, Janine Dr.med. (1) Annibale, Paolo Dr. (1) Bahry, Ella Dr. (1) Barke, Niclas (1) Berruezo Llacuna, Maria (1) Beule, Dieter Dr. (1) Birchmeier-Kohler, Carmen Prof. Dr. (3) Blume, Alexander Dr. (6) Borodina, Tatiana Dr. (1) Carvalho, Silvia Filipa (1) Chekulaeva, Marina Dr. (2) Chen, Wei Prof. Dr. (1) Chu, Van Trung Dr. (1) Costanza, Mariantonia Dr. (2) Daumke, Oliver Prof. Dr. (4) Del Giudice, Simone (1) Deter, Aylina (1) Diecke, Sebastian Dr. (2) Di Virgilio, Michela Prof. Dr. (2) Driesner, Madlen (1) Escobar Fernandez, Helena Dr. (1) Faxel, Miriam (1) Franke, Vedran Dr. (22) Freimuth, Jonas (1) Gerhardt, Holger Prof. Dr. (1) Ghanbari, Mahsa Dr. (1) Gil, Marine (1) Graf, Robin Dr. (1) Harabula, Izabela-Cezara (1) Haucke, Volker Professor (1) Hedtrich, Sarah Prof. Dr. (74) Herzog, Margareta (1) Hinz, Michael Dr. (2) Hirsekorn, Antje (4) Höpken, Uta Elisabeth PD Dr. (2) Hübner, Norbert Prof. Dr. (1) Irastorza Azcarate, Ibai Dr. (1) Janz, Martin Dr. (3) Junker, Jan Philipp Prof. Dr. (1) Keller, Lisa (1) Kempa, Stefan Dr. (1) Kirchner, Marieluise Dr. (1) Kocks, Christine Dr. (2) Kolesnichenko, Marina Dr. (3) Kühn, Ralf Dr. (1) Kukalev, Alexander Dr. (2) Lacadie, Scott Allen Dr. (3) Landthaler, Markus Prof. Dr. (5) Lee, Young-Ae Prof. Dr. (1) Lohse, Martin Prof. Dr. (1) Lusatis, Simone (1) Marg, Andreas Dr. (1) Mathas, Stephan Dr. (3) Meijer, Mandy Dr. (1) Merks, Anne Margarete Dr. (1) Mertins, Philipp Dr. (1) Monti, Remo (1) Müller, Thomas Dr. (1) Müthel, Stefanie (3) Ofenbauer, Andreas Dr. (1) Ohler, Uwe Prof. Dr. (10) Panakova, Daniela Dr. (1) Patarcic, Inga Dr. (1) Patone, Giannino Dr. (1) Pombo, Ana Prof. Dr. (3) Popp, Oliver Dr. (1) Preibisch, Stephan Dr. (1) Prigione, Alessandro Prof. Dr. (1) Quedenau, Claudia (1) Rajewsky, Klaus Prof. Dr. (2) Rajewsky, Nikolaus Prof. Dr. (8) Rathgeber, Anja (1) Rehm, Armin Dr. (1) Roske, Yvette Dr. (1) Rrustemi, Trendelina (1) Rudolph, Ina-Maria Dr. (1) Scheidereit, Claus Prof. Dr. (4) Schmidt-Ullrich, Ruth Dr. (1) Schmitt, Clemens Prof. Dr. (1) Selbach, Matthias Prof. Dr. (5) Serebreni, Leonid Dr. (1) Siffrin, Volker (1) Spuler, Simone Prof. (2) Szabo, Dominik (1) Thieme, Christoph Dr. (1) Tursun, Baris Dr. (4) Uyar, Bora Dr. (15) Vucicevic, Dubravka (2) Willimsky, Gerald Dr. (1) Willnow, Thomas Prof. Dr. (1) Winick-Ng, Warren Dr. (1) Woehler, Andrew Dr. (3) Wurmus, Ricardo (9) Wyler, Emanuel Dr. (4) Zampieri, Niccolo Dr. (1) Zauber, Henrik Dr. (1) Zea Redondo, Luna (1) 2006 (2) 2007 (1) 2008 (1) 2009 (3) 2010 (3) 2011 (1) 2012 (4) 2013 (3) 2014 (4) 2015 (12) 2016 (4) 2017 (20) 2018 (16) 2019 (23) 2020 (15) 2021 (21) 2022 (16) 2023 (10) 2024 (6) Advanced Light Microscopy (43) AG Müller/Dechend (ECRC) (472) AG Schreiber [ECRC] (57) Allosteric Proteomics Lab (18) Anchored Signalling (114) Angiogenesis & Metabolism Laboratory (58) Animal Phenotyping (50) Biobank (424) (-) Bioinformatics and Omics Data Science (90) Bioinformatics of RNA Structure and Transcriptome Regulation (47) Biology of Malignant Lymphomas (97) Biomedical Image Analysis (53) Cancer Genetics and Cellular Stress Responses (96) Cardiac MRI (283) Cardiovascular-Hematopoietic Interaction (16) Cell Biology of Immunity (62) Cellular Neurosciences (456) Chromatin (dys)function in disease (19) Clinical Research Unit (21) Clinic of Psychiatry / Modul Psychiatry of Aging (68) Computational methodologies and omic analytics (14) Computational Regulatory Genomics (168) Cryo-Electron Microscopy (17) Developmental Biology / Signal Transduction (211) Developmental Neurobiology (110) Development and Function of Neural Circuits (34) Electron Microscopy (7) Endocrinology, Diabetes and Nutritional Medicine (36) Epigenetic Modifications in Neuroblastoma (79) Epigenetic Regulation and Chromatin Architecture (129) Experimental Ultrahigh-Field MR (339) Flow Cytometry (8) From Cell States to Function (9) Gastrointestinal Barrier, Regeneration and Carcinogenesis (44) Genetics and Genomics of Cardiovascular Diseases (431) Genetics of Congenital Heart Disease (69) Genetics of Metabolic and Reproductive Disorders (24) Genome Diversification & Integrity (29) Genome Engineering & Disease Models (156) Genome instability and somatic mosaicism (41) Genomics (347) Host-microbiome factors in cardiovascular disease (138) Hypertension-caused End-Organ Damage (472) Hypertension-Mediated End-Organ Damage (472) Image Data Analysis (15) immune Cell Function in Health and Disease (35) Immune Dysregulations in Oncology (69) Immune Mechanisms and Human Antibodies (23) Immune Regulation and Cancer (95) Innate Immunity & Neuroinflammation (67) In Situ Structural Biology (55) Integrative Vascular Biology (162) Interdisciplinary Retina Research (110) Intracellular Proteolysis (138) Kidney Cell Engineering (17) Magnetic Resonance (339) Mathematical Cell Physiology (126) Mathematical Modelling of Cellular Processes (60) Mechanism-based Cancer Therapies (86) Microenvironmental Regulation in Autoimmunity and Cancer (84) Mobile DNA (188) Molecular and cellular basis of behavio (9) Molecular Biology of Peptide Hormones (787) Molecular Cardiovascular Research (205) Molecular Epidemiology (424) Molecular Genetics of Chronic Inflammation and Allergic Disease (90) Molecular Immunology and Gene Therapy (239) Molecular mechanisms of environment sensing (12) Molecular Oncology (27) Molecular Pathways in Cortical Development (30) Molecular Physiology of Somatic Sensation (174) Myology (135) Nephrology and Inflammatory Vascular Diseases (159) Neural Circuits and Behaviour (62) Neuroimmunology Laboratory (51) Neurovascular link in neuroendocrine tumors (8) Non-coding RNAs and Mechanisms of Cytoplasmic Gene Regulation (28) Organoids (10) Out-patient Clinic for Neuroimmunology (680) Out-patient Clinic for Pediatric Allergology and Atopic Dermatitis (90) Pancreatic Organoid Research and Disease Modeling (130) Pathogenesis of ANCAinduced Glomerulonephritis (110) Pluripotent Stem Cells (72) Protein Production and Characterization (28) Proteome Dynamics (138) Proteomics (135) Proteomics and Metabolomics (99) Proteomics and Molecular Mechanisms of Neurodegenerative Diseases (377) Psychoneuroimmunology (47) Quantitative Developmental Biology (50) Quantitative Stem Cell Biology (28) RNA Biology and Posttranscriptional Regulation (140) Single Molecule Biophysics probing Quantitative Neuroscience (14) Spatial Proteomics (26) Stem Cell Dynamics and Mitochondrial Genomics (43) Stem Cell Modeling of Development and Disease (20) Structural Biology of Membrane-Associated Processes (110) Synaptic Transmission and Plasticity (209) Systems Biology Imaging (35) Systems biology of cardiovascular and neuronal pathologies (11) Systems Biology of Gene Regulatory Elements (190) Systems Hematology, Stem Cells & Precision Medicine (46) Transgenics (156) Translational Approaches in Heart Failure and Cardiometabolic Disease (121) Translational Bioinformatics (105) Translational Cardiology and Functional Genomics (103) Translational Neuroimmunology (56) Translational Oncology of Solid Tumors (917) (-) Translational Organ Models (75) Translational Tumorimmunology (33) Tumor heterogeneity and treatment resistance in pediatric cancer (8) 165 Results: Active Filter: Bioinformatics and Omics Data ScienceTranslational Organ Models Sort: Result score Newest to oldest Oldest to newest April 01, 2015 / Bioinformatics genomation: a toolkit to summarize, annotate and visualize genomic intervals A. Akalin V. Franke K. Vlahoviček C.E. Mason D. Schübeler December 11, 2014 / Cell Rep DNA hydroxymethylation profiling reveals that WT1 mutations result in loss of TET2 function in acute myeloid leukemia R. Rampal A. Akalin J. Madzo A. Vasanthakumar E. Pronier J. Patel Y. Li J. Ahn O. Abdel-Wahab A. Shih C. Lu P.S. Ward J.J. Tsai T. Hricik V. Tosello J.E. Tallman X. Zhao D. Daniels Q. Dai L. Ciminio I. Aifantis C. He F. Fuks M.S. Tallman A. Ferrando S. Nimer E. Paietta C.B. Thompson J.D. Licht C.E. Mason L.A. Godley A. Melnick M.E. Figueroa R.L. Levine April 09, 2015 / Nature Genomic profiling of DNA methyltransferases reveals a role for DNMT3B in genic methylation T. Baubec D.F. Colombo C. Wirbelauer J. Schmidt L. Burger A.R. Krebs A. Akalin D. Schübeler July 03, 2017 / Nucleic Acids Res The RNA workbench: best practices for RNA and high-throughput sequencing bioinformatics in Galaxy B.A. Grüning J. Fallmann D. Yusuf S. Will A. Erxleben F. Eggenhofer T. Houwaart B. Batut P. Videm A. Bagnacani M. Wolfien S.C. Lott Y. Hoogstrate W.R. Hess O. Wolkenhauer S. Hoffmann A. Akalin U. Ohler P.F. Stadler R. Backofen November 10, 2017 / J Biotechnol Strategies for analyzing bisulfite sequencing data K. Wreczycka A. Gosdschan D. Yusuf B. Grüning Y. Assenov A. Akalin September 19, 2017 / Nat Commun RNA localization is a key determinant of neurite-enriched proteome A. Zappulo D. van den Bruck C. Ciolli Mattioli V. Franke K. Imami E. McShane M. Moreno-Estelles L. Calviello A. Filipchyk E. Peguero-Sanchez T. Müller A. Woehler C. Birchmeier E. Merino N. Rajewsky U. Ohler E.O. Mazzoni M. Selbach A. Akalin M. Chekulaeva October 16, 2017 / Mol Syst Biol RNA polymerase II primes Polycomb-repressed developmental genes throughout terminal neuronal differentiation C. Ferrai E. Torlai Triglia J.R. Risner-Janiczek T. Rito O.J.L. Rackham I. De Santiago A. Kukalev M. Nicodemi A. Akalin M. Li M.A. Ungless A. Pombo October 31, 2017 / Genome Biol Widespread activation of antisense transcription of the host genome during herpes simplex virus 1 infection E. Wyler J. Menegatti V. Franke C. Kocks A. Boltengagen T. Hennig K. Theil A. Rutkowski C. Ferrai L. Baer L. Kermas C. Friedel N. Rajewsky A. Akalin L. Dölken F. Grässer M. Landthaler January 01, 2015 / Lect Notes Comput Sci Reproducible and user-controlled software environments in HPC with Guix L. Courtes R. Wurmus June 02, 2017 / Nucleic Acids Res RCAS: an RNA centric annotation system for transcriptome-wide regions of interest B. Uyar D. Yusuf R. Wurmus N. Rajewsky U. Ohler A. Akalin Pagination Current page 1 Page 2 Page 3 Page 4 … Next page Next › Last page Last »
April 01, 2015 / Bioinformatics genomation: a toolkit to summarize, annotate and visualize genomic intervals A. Akalin V. Franke K. Vlahoviček C.E. Mason D. Schübeler
December 11, 2014 / Cell Rep DNA hydroxymethylation profiling reveals that WT1 mutations result in loss of TET2 function in acute myeloid leukemia R. Rampal A. Akalin J. Madzo A. Vasanthakumar E. Pronier J. Patel Y. Li J. Ahn O. Abdel-Wahab A. Shih C. Lu P.S. Ward J.J. Tsai T. Hricik V. Tosello J.E. Tallman X. Zhao D. Daniels Q. Dai L. Ciminio I. Aifantis C. He F. Fuks M.S. Tallman A. Ferrando S. Nimer E. Paietta C.B. Thompson J.D. Licht C.E. Mason L.A. Godley A. Melnick M.E. Figueroa R.L. Levine
April 09, 2015 / Nature Genomic profiling of DNA methyltransferases reveals a role for DNMT3B in genic methylation T. Baubec D.F. Colombo C. Wirbelauer J. Schmidt L. Burger A.R. Krebs A. Akalin D. Schübeler
July 03, 2017 / Nucleic Acids Res The RNA workbench: best practices for RNA and high-throughput sequencing bioinformatics in Galaxy B.A. Grüning J. Fallmann D. Yusuf S. Will A. Erxleben F. Eggenhofer T. Houwaart B. Batut P. Videm A. Bagnacani M. Wolfien S.C. Lott Y. Hoogstrate W.R. Hess O. Wolkenhauer S. Hoffmann A. Akalin U. Ohler P.F. Stadler R. Backofen
November 10, 2017 / J Biotechnol Strategies for analyzing bisulfite sequencing data K. Wreczycka A. Gosdschan D. Yusuf B. Grüning Y. Assenov A. Akalin
September 19, 2017 / Nat Commun RNA localization is a key determinant of neurite-enriched proteome A. Zappulo D. van den Bruck C. Ciolli Mattioli V. Franke K. Imami E. McShane M. Moreno-Estelles L. Calviello A. Filipchyk E. Peguero-Sanchez T. Müller A. Woehler C. Birchmeier E. Merino N. Rajewsky U. Ohler E.O. Mazzoni M. Selbach A. Akalin M. Chekulaeva
October 16, 2017 / Mol Syst Biol RNA polymerase II primes Polycomb-repressed developmental genes throughout terminal neuronal differentiation C. Ferrai E. Torlai Triglia J.R. Risner-Janiczek T. Rito O.J.L. Rackham I. De Santiago A. Kukalev M. Nicodemi A. Akalin M. Li M.A. Ungless A. Pombo
October 31, 2017 / Genome Biol Widespread activation of antisense transcription of the host genome during herpes simplex virus 1 infection E. Wyler J. Menegatti V. Franke C. Kocks A. Boltengagen T. Hennig K. Theil A. Rutkowski C. Ferrai L. Baer L. Kermas C. Friedel N. Rajewsky A. Akalin L. Dölken F. Grässer M. Landthaler
January 01, 2015 / Lect Notes Comput Sci Reproducible and user-controlled software environments in HPC with Guix L. Courtes R. Wurmus
June 02, 2017 / Nucleic Acids Res RCAS: an RNA centric annotation system for transcriptome-wide regions of interest B. Uyar D. Yusuf R. Wurmus N. Rajewsky U. Ohler A. Akalin