Scientific Publications Search Search Author Impact Factor Release Date Research Group Search Sort by RelevanceFrom A-ZAuthored onDate/Time RangeRelease date Order AscDesc Altmueller, Janine Dr.med. (1) Annibale, Paolo Dr. (1) Bahry, Ella Dr. (1) Barke, Niclas (1) Berruezo Llacuna, Maria (1) Birchmeier-Kohler, Carmen Prof. Dr. (3) Blume, Alexander Dr. (6) Borodina, Tatiana Dr. (1) Carvalho, Silvia Filipa (1) Cerda Jara, Cledi Alicia (1) Chekulaeva, Marina Dr. (2) Chen, Wei Prof. Dr. (1) Chu, Van Trung Dr. (1) Costanza, Mariantonia Dr. (2) Daumke, Oliver Prof. Dr. (4) Del Giudice, Simone (1) Deter, Aylina (1) Diecke, Sebastian Dr. (2) Di Virgilio, Michela Prof. Dr. (2) Driesner, Madlen (1) Emmenegger, Lisa (1) Escobar Fernandez, Helena Dr. (1) Faxel, Miriam (1) Franke, Vedran Dr. (23) Freimuth, Jonas (1) Gerhardt, Holger Prof. Dr. (1) Ghanbari, Mahsa Dr. (1) Gil, Marine (1) Graf, Robin Dr. (1) Harabula, Izabela-Cezara (1) Haucke, Volker Professor (1) Herzog, Margareta (1) Hinz, Michael Dr. (2) Hirsekorn, Antje (4) Höpken, Uta Elisabeth PD Dr. (2) Hübner, Norbert Prof. Dr. (1) Irastorza Azcarate, Ibai Dr. (1) Janz, Martin Dr. (3) Junker, Jan Philipp Prof. Dr. (1) Keller, Lisa (1) Kempa, Stefan Dr. (2) Kirchner, Marieluise Dr. (1) Kocks, Christine Dr. (2) Kolesnichenko, Marina Dr. (3) Kühn, Ralf Dr. (1) Kukalev, Alexander Dr. (2) Lacadie, Scott Allen Dr. (3) Landthaler, Markus Prof. Dr. (6) Lohse, Martin Prof. Dr. (1) Lusatis, Simone (1) Marg, Andreas Dr. (1) Mastrobuoni, Guido Dr. (1) Mathas, Stephan Dr. (3) Meijer, Mandy Dr. (1) Merks, Anne Margarete Dr. (1) Mertins, Philipp Dr. (1) Monti, Remo (1) Müthel, Stefanie (3) Ofenbauer, Andreas Dr. (1) Ohler, Uwe Prof. Dr. (10) Oliveras Martinez, Anna Dr. (1) Panakova, Daniela Dr. (1) Patarcic, Inga Dr. (1) Patone, Giannino Dr. (1) Pombo, Ana Prof. Dr. (3) Popp, Oliver Dr. (1) Preibisch, Stephan Dr. (1) Prigione, Alessandro Prof. Dr. (1) Quedenau, Claudia (1) Rajewsky, Klaus Prof. Dr. (2) Rajewsky, Nikolaus Prof. Dr. (9) Rathgeber, Anja (1) Rehm, Armin Dr. (1) Roske, Yvette Dr. (1) Rudolph, Ina-Maria Dr. (1) Rybak-Wolf, Agnieszka Dr. (1) Scheidereit, Claus Prof. Dr. (4) Schmidt-Ullrich, Ruth Dr. (1) Schmitt, Clemens Prof. Dr. (1) Selbach, Matthias Prof. Dr. (5) Serebreni, Leonid Dr. (1) Siffrin, Volker (1) Spuler, Simone Prof. (2) Szabo, Dominik (1) Thieme, Christoph Dr. (1) Tursun, Baris Dr. (4) Uyar, Bora Dr. (15) Vucicevic, Dubravka (2) Willimsky, Gerald Dr. (1) Willnow, Thomas Prof. Dr. (1) Winick-Ng, Warren Dr. (1) Woehler, Andrew Dr. (4) Wurmus, Ricardo (10) Wyler, Emanuel Dr. (5) Zampieri, Niccolo Dr. (1) Zauber, Henrik Dr. (1) Zea Redondo, Luna (1) Zinzen, Robert Patrick Dr. (1) (-) Akalin, Altuna Dr. (75) (-) Müller, Thomas Dr. (1) 2006 (2) 2007 (1) 2008 (1) 2009 (3) 2010 (3) 2011 (1) 2012 (4) 2013 (3) 2014 (3) 2015 (3) 2017 (6) 2018 (6) 2019 (9) 2020 (7) 2021 (9) 2022 (6) 2023 (6) 2024 (2) Advanced Light Microscopy (2) (-) Bioinformatics and Omics Data Science (75) Biology of Malignant Lymphomas (4) Biomedical Image Analysis (1) Cancer Genetics and Cellular Stress Responses (1) Cellular Neurosciences (1) Chemical Biology (1) Computational Regulatory Genomics (9) Developmental Biology / Signal Transduction (28) Developmental Neurobiology (2) Development and Function of Neural Circuits (1) Electron Microscopy (1) Epigenetic Regulation and Chromatin Architecture (4) Genetics and Genomics of Cardiovascular Diseases (29) Genetics of Congenital Heart Disease (5) Genetics of Metabolic and Reproductive Disorders (3) Genome Diversification & Integrity (3) Genome Engineering & Disease Models (4) Genomics (2) Host-microbiome factors in cardiovascular disease (1) Immune Regulation and Cancer (3) Innate Immunity & Neuroinflammation (1) Integrative Vascular Biology (1) Intracellular Proteolysis (1) Mathematical Modelling of Cellular Processes (1) Microenvironmental Regulation in Autoimmunity and Cancer (2) Mobile DNA (3) Molecular Cardiovascular Research (3) Molecular Genetics of Chronic Inflammation and Allergic Disease (40) Molecular Physiology of Somatic Sensation (2) Myology (2) Neural Circuits and Behaviour (3) Neuroimmunology Laboratory (1) Non-coding RNAs and Mechanisms of Cytoplasmic Gene Regulation (4) Organoids (3) Out-patient Clinic for Neuroimmunology (3) Pluripotent Stem Cells (9) Protein Production and Characterization (1) Proteome Dynamics (9) Proteomics (4) Proteomics and Metabolomics (1) Proteomics and Molecular Mechanisms of Neurodegenerative Diseases (199) Psychoneuroimmunology (1) Quantitative Developmental Biology (1) Quantitative Stem Cell Biology (3) RNA Biology and Posttranscriptional Regulation (8) Screening Unit (1) Stem Cell Modeling of Development and Disease (1) Structural Biology of Membrane-Associated Processes (6) Synaptic Transmission and Plasticity (223) Systems Biology Imaging (2) Systems Biology of Gene Regulatory Elements (11) Transgenics (4) Translational Bioinformatics (5) Translational Cardiology and Functional Genomics (2) Translational Tumorimmunology (1) 75 Results: Active Filter: Akalin, Altuna Dr.Müller, Thomas Dr.Bioinformatics and Omics Data Science Sort: Result score Newest to oldest Oldest to newest April 11, 2024 / Nat Commun Pathogenic mutations of human phosphorylation sites affect protein–protein interactions T. Rrustemi K. Meyer Y. Roske B. Uyar A. Akalin K. Imami Y. Ishihama O. Daumke M. Selbach August 06, 2024 / BMC Bioinformatics scMaui: a widely applicable deep learning framework for single-cell multiomics integration in the presence of batch effects and missing data Y. Jeong J. Ronen W. Kopp P. Lutsik A. Akalin March 24, 2021 / bioRxiv Herpesviral induction of germline transcription factor DUX4 is critical for viral gene expression S. Walter V. Franke N. Drayman E. Wyler S. Tay M. Landthaler A. Akalin A. Ensser F. Full 2020 Computational genomics with R A. Akalin June, 2023 / NAR Genom Bioinform Cardiovascular disease biomarkers derived from circulating cell-free DNA methylation R.R.C. Cuadrat A. Kratzer H.G. Arnal A.C. Rathgeber K. Wreczycka A. Blume I.B. Gündüz V. Ebenal T. Mauno B. Osberg M. Moobed J. Hartung K. Jakobs C. Seppelt D. Meteva A. Haghikia D.M. Leistner Ulf Landmesser A. Akalin November 07, 2023 / Nat Commun Transcriptional reprogramming by mutated IRF4 in lymphoma N. Schleussner P. Cauchy V. Franke M. Giefing O. Fornes N. Vankadari S.A. Assi M. Costanza M.A. Weniger A. Akalin I. Anagnostopoulos T. Bukur M.G. Casarotto F. Damm O. Daumke B. Edginton-White J.C.M. Gebhardt M. Grau S. Grunwald M.L. Hansmann S. Hartmann L. Huber E. Kärgel S. Lusatis D. Noerenberg N. Obier U. Pannicke A. Fischer A. Reisser A. Rosenwald K. Schwarz S. Sundararaj A. Weilemann W. Winkler W. Xu G. Lenz K. Rajewsky W.W. Wasserman P.N. Cockerill C. Scheidereit R. Siebert R. Küppers R. Grosschedl M. Janz C. Bonifer S. Mathas November 30, 2023 / Nat Commun The SPOC proteins DIDO3 and PHF3 co-regulate gene expression and neuronal differentiation J. Benedum V. Franke L.M. Appel L. Walch M. Bruno R. Schneeweiss J. Gruber H. Oberndorfer E. Frank X. Strobl A. Polyansky B. Zagrovic A. Akalin D. Slade June 24, 2021 / Sci Rep Predicting lethal courses in critically ill COVID-19 patients using a machine learning model trained on patients with non-COVID-19 viral pneumonia G. Lichtner F. Balzer S. Haufe N. Giesa F. Schiefenhövel M. Schmieding C. Jurth W. Kopp A. Akalin S.J. Schaller S. Weber-Carstens C. Spies F. von Dincklage January 13, 2022 / Cell Genom Single-cell-resolved dynamics of chromatin architecture delineate cell and regulatory states in zebrafish embryos A.C. McGarvey W. Kopp D. Vučićević K. Mattonet R. Kempfer A. Hirsekorn I. Bilić M. Gil A. Trinks A.M. Merks D. Panáková A. Pombo A. Akalin J.P. Junker D.Y.R. Stainier D. Garfield U. Ohler S.A. Lacadie February, 2022 / Nat Mach Intell Simultaneous dimensionality reduction and integration for single-cell ATAC-seq data using deep learning W. Kopp A. Akalin U. Ohler Pagination Current page 1 Page 2 Page 3 Page 4 … Next page Next › Last page Last »
April 11, 2024 / Nat Commun Pathogenic mutations of human phosphorylation sites affect protein–protein interactions T. Rrustemi K. Meyer Y. Roske B. Uyar A. Akalin K. Imami Y. Ishihama O. Daumke M. Selbach
August 06, 2024 / BMC Bioinformatics scMaui: a widely applicable deep learning framework for single-cell multiomics integration in the presence of batch effects and missing data Y. Jeong J. Ronen W. Kopp P. Lutsik A. Akalin
March 24, 2021 / bioRxiv Herpesviral induction of germline transcription factor DUX4 is critical for viral gene expression S. Walter V. Franke N. Drayman E. Wyler S. Tay M. Landthaler A. Akalin A. Ensser F. Full
June, 2023 / NAR Genom Bioinform Cardiovascular disease biomarkers derived from circulating cell-free DNA methylation R.R.C. Cuadrat A. Kratzer H.G. Arnal A.C. Rathgeber K. Wreczycka A. Blume I.B. Gündüz V. Ebenal T. Mauno B. Osberg M. Moobed J. Hartung K. Jakobs C. Seppelt D. Meteva A. Haghikia D.M. Leistner Ulf Landmesser A. Akalin
November 07, 2023 / Nat Commun Transcriptional reprogramming by mutated IRF4 in lymphoma N. Schleussner P. Cauchy V. Franke M. Giefing O. Fornes N. Vankadari S.A. Assi M. Costanza M.A. Weniger A. Akalin I. Anagnostopoulos T. Bukur M.G. Casarotto F. Damm O. Daumke B. Edginton-White J.C.M. Gebhardt M. Grau S. Grunwald M.L. Hansmann S. Hartmann L. Huber E. Kärgel S. Lusatis D. Noerenberg N. Obier U. Pannicke A. Fischer A. Reisser A. Rosenwald K. Schwarz S. Sundararaj A. Weilemann W. Winkler W. Xu G. Lenz K. Rajewsky W.W. Wasserman P.N. Cockerill C. Scheidereit R. Siebert R. Küppers R. Grosschedl M. Janz C. Bonifer S. Mathas
November 30, 2023 / Nat Commun The SPOC proteins DIDO3 and PHF3 co-regulate gene expression and neuronal differentiation J. Benedum V. Franke L.M. Appel L. Walch M. Bruno R. Schneeweiss J. Gruber H. Oberndorfer E. Frank X. Strobl A. Polyansky B. Zagrovic A. Akalin D. Slade
June 24, 2021 / Sci Rep Predicting lethal courses in critically ill COVID-19 patients using a machine learning model trained on patients with non-COVID-19 viral pneumonia G. Lichtner F. Balzer S. Haufe N. Giesa F. Schiefenhövel M. Schmieding C. Jurth W. Kopp A. Akalin S.J. Schaller S. Weber-Carstens C. Spies F. von Dincklage
January 13, 2022 / Cell Genom Single-cell-resolved dynamics of chromatin architecture delineate cell and regulatory states in zebrafish embryos A.C. McGarvey W. Kopp D. Vučićević K. Mattonet R. Kempfer A. Hirsekorn I. Bilić M. Gil A. Trinks A.M. Merks D. Panáková A. Pombo A. Akalin J.P. Junker D.Y.R. Stainier D. Garfield U. Ohler S.A. Lacadie
February, 2022 / Nat Mach Intell Simultaneous dimensionality reduction and integration for single-cell ATAC-seq data using deep learning W. Kopp A. Akalin U. Ohler