Scientific Publications

Identifying cancer cells from calling single-nucleotide variants in scRNA-seq data

V. Marot-Lassauzaie
S. Beneyto-Calabuig
B. Obermayer
L. Velten
D. Beule
L. Haghverdi

Compound-SNE: comparative alignment of t-SNEs for multiple single-cell omics data visualization

C.G. Cess
L. Haghverdi

Single-cell multi-omics analysis identifies context-specific gene regulatory gates and mechanisms

S.A. Malekpour
L. Haghverdi
M. Sadeghi

Single-cell time series analysis reveals the dynamics of HSPC response to inflammation

B.J. Bouman
Y. Demerdash
S. Sood
F. Grünschläger
F. Pilz
A.R. Itani
A. Kuck
V. Marot-Lassauzaie
S. Haas
L. Haghverdi
M.A. Essers

Adjustments to the reference dataset design improve cell type label transfer

C. Mölbert
L. Haghverdi

Single-cell multi-omics and lineage tracing to dissect cell fate decision-making

L. Haghverdi
L.S. Ludwig

Towards reliable quantification of cell state velocities

V. Marot-Lassauzaie
B.J. Bouman
F.D. Donaghy
Y. Demerdash
M.A.G. Essers
L. Haghverdi

September 09, 2022 / Genome Med

Single-cell transcriptomics reveals common epithelial response patterns in human acute kidney injury

C. Hinze
C. Kocks
J. Leiz
N. Karaiskos
A. Boltengagen
S. Cao
C.M. Skopnik
J. Klocke
J.H. Hardenberg
H. Stockmann
I. Gotthardt
B. Obermayer
L. Haghverdi
E. Wyler
M. Landthaler
S. Bachmann
A.C. Hocke
V. Corman
J. Busch
W. Schneider
N. Himmerkus
M. Bleich
K.U. Eckardt
P. Enghard
N. Rajewsky
K.M. Schmidt-Ott

KDD Health Day/DSHealth 2021: Joint KDD 2021 Health Day and 2021 KDD Workshop on Applied Data Science for Healthcare: state of XAI and trustworthiness in health

F. Wang
P. Chakraborty
T. Xu
P.Y.S. Hsueh
X. Sun
G. Stiglic
G. Crane
J. Bian
L. Haghverdi
L. Yao
F. Buettner

Batch effects in single-cell RNA-sequencing data are corrected by matching mutual nearest neighbors

L. Haghverdi
A.T.L. Lun
M.D. Morgan
J.C. Marioni