lung epithel cells

New technology to study virus infections

A new tool can identify cells that are actively responding to a SARS-CoV-2 infection. As reported in "Science Advances" by the Gargiulo lab, it can be used to screen for effective COVID-19 therapies and can be tailored to study other viruses as well.

When we breathe, the SARS-CoV-2 virus enters the body through the cells of the upper respiratory tract. Sensing an invader, the epithelial cells, which are the first line of defence, mount an immediate and broad “innate” defense and trigger an alarm. The immune system then launches a cascade of vigorous, targeted attacks. Understanding how these cells respond to infection and modulate their response pharmacologically is of paramount importance in developing effective treatments for viral diseases like COVID-19. Scientists at the Max Delbrück Center engineered lung epithelial cells grown in the lab to light up red in color once they launch an immune response. This tool can be used to screen for drugs that can help treat COVID-19 and other emerging infections. The findings, by Dr. Gaetano Gargiulo, head of the “Molecular Oncology” lab, are reported in "Science Advances."

This tool was originally developed in the Gargiulo lab to study cancer. But during the pandemic, the scientists decided to trial it in virus-infected cells. "Our team decided to create this tool to understand and fight viral infections in the spirit of doing our part during this pandemic" says Gargiulo, senior author of the study. "It may be possible to rapidly address emerging pandemics in the future by tailoring our tool to recognize novel viral strains"

Tracking the cells immune responses in real time

The most exciting moment was when we saw that the infection with different strains of the live virus actually triggers the color coding.
 Ben Jiang
Ben Jiang PhD student at the Max Delbrück Center

The tool is called synthetic locus control region” (sLCR) and it consists of a lab-generated segment of DNA that switches a fluorescent protein on or off depending on whether the cell is mounting an immune response. During an innate immune response, the sLCR is turned on and it makes a protein that glows redwhen observed under a fluorescence microscope, telling scientists that the cell is aware of being infected and also how strongly it is fighting back.

The scientists constructed an sLCR containing several unique DNA sequences which they had predicted would be active during a SARS-CoV-2 infection based on other studies. They inserted the sLCRs into epithelial cells grown in a petri dish, which could then infected with the SARS-CoV-2 virus. The cells glowed red once the innate immunity was activated by the infection or surrogate biochemical cues, and they were visualized using fluorescence microscopy. "The most exciting moment was when we saw that the infection with different strains of the live virus actually triggers the color coding," says Ben Jiang, a graduate student at the Gargiulo lab and co-first author of the study. Experiments with the live viral particles were possible thanks to the inter-Helmholtz collaboration between the Gargiulo lab and the group led by Luka Cicin-Sain at the Helmholtz-Zentrum für Infektionsforschung (HZI) in Braunschweig.

This image shows a lung epithelial cell line, whose membranes and nuclei are stained in red and blue. The green signal defines cells expressing the fluorescent protein in response to SARS-CoV-2 infection.

Finding new treatments for viral diseases

The technology could be easily applied to more sophisticated disease models, such as organoids or mice.
Matthias-Jürgen Schmitt
Matthias Schmitt PhD student at the Max Delbrück Center

Such a simple read out enabled the scientists to look for drugs that inhibited or enhanced cells’ responses to the virus. They found that cells treated with some rheumatoid arthritis drugs did not glow red, suggesting the drug blocked the immune response. When the cells were treated with certain chemotherapy drugs, the cells glowed more intensely, suggesting the drug enhanced the immune response.

The opposing effects may prove useful at different stages of COVID-19. At the start, a drug that provokes a strong immune response could help battle the virus. But later on in the disease, a prolonged response could worsen the pathology. "With a tool like this, one can identify compounds to strengthen or weaken the epithelial immune response, both of which can be useful depending on the disease stage and symptoms", Jiang says.

In particular, the discovery that DNA damaging agents can enhance the alert signal from epithelial cells supports low-dose radiotherapy as a potential treatment for viral infections including COVID-19. This was tested during the pandemic, but needs precise dosage and timing, says Gargiulo.

Though this study was done in cell cultures, the drugs identified have been studied in clinical trials for COVID-19 by other groups. Hence, this tool could be used to screen drugs in bulk to find novel combinations and drugs that can be further trialled to see if they are effective in people. Moreover, “the technology could be easily applied to more sophisticated disease models, such as organoids or mice”, says the other co-first author Matthias Schmitt.

“The same approach can be readily re-purposed to target other viral infections, such as the emerging threat of Dengue and Zika viruses,” says Gargiulo “and the technology is accessible to labs around the world to find drugs to combat emerging infectious diseases timely.”

Text: gav


Further information

Lighting up tumor cells


Ben Jiang, Matthias Jürgen Schmitt et al. (2023): „Pharmacological modulators of epithelial immunity uncovered by synthetic genetic tracing of SARS-CoV-2 infection responses“. Science Advances, DOI: 10.1126/sciadv.adf4975


Dr. Gaetano Gargiulo
Head of the Molecular Oncology Lab at the Max Delbrück Center
Tel.: +49 30 9406-3861

Christina Anders
Editor Communications Department
Max Delbrück Center for Molecular Medicine in the Helmholtz Association (MDC)
Tel.: +49-(0)30-9406-2118 or

Max Delbrück Center

The Max Delbrück Center for Molecular Medicine in the Helmholtz Association (Max Delbrück Center) is one of the world’s leading biomedical research institutions. Max Delbrück, a Berlin native, was a Nobel laureate and one of the founders of molecular biology. At the locations in Berlin-Buch and Mitte, researchers from some 70 countries study human biology – investigating the foundations of life from its most elementary building blocks to systems-wide mechanisms. By understanding what regulates or disrupts the dynamic equilibrium of a cell, an organ, or the entire body, we can prevent diseases, diagnose them earlier, and stop their progression with tailored therapies. Patients should be able to benefit as soon as possible from basic research discoveries. This is why the Max Delbrück Center supports spin-off creation and participates in collaborative networks. It works in close partnership with Charité – Universitätsmedizin Berlin in the jointly-run Experimental and Clinical Research Center (ECRC), the Berlin Institute of Health (BIH) at Charité, and the German Center for Cardiovascular Research (DZHK). Founded in 1992, the Max Delbrück Center today employs 1,800 people and is 90 percent funded by the German federal government and 10 percent by the State of Berlin.