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Analyses of murine lymph node endothelial cell subsets using single-cell RNA sequencing and spectral flow cytometry

Authors

  • L. Menzel
  • M. Zschummel
  • A. Rehm

Journal

  • STAR Protocols

Citation

  • STAR Protoc 3 (2): 101267

Abstract

  • Blood endothelial cells (BECs) in lymph nodes are distinct stromal cells with a transcriptional profile allowing fast and specific adaptation to the functional requirements. Here, we describe a step-by-step protocol for the enzymatic digestion of lymph nodes, the enrichment of stromal cells, the sorting of BECs, and the processing of BEC-related data for modern analysis approaches as spectral flow cytometry and single-cell RNA sequencing (scRNA-seq). For complete details on the use and execution of this protocol, please refer to Menzel et al. (2021).


DOI

doi:10.1016/j.xpro.2022.101267